Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi150g00004 ATGGCGAGGACGAGGCTCAGAATGGAATGGGCAGAATCCGATTCAAGCTCTGATTCTCTGATAATACGCATCTTAGAGTGCAGGTTCTTTCGTCGTGCTCGTAAGAAGGATGAAGTAACTTTTTCTTCAGGAAGTTTTACTTCTCGCAGAAACTTAAGAGGATTGGGCGAATTGGAGTTTCTTGAGGAGCTCGCCGAAGGCGGTTACGGCAGAGTTTTCCGCTGCCGTGATCTCAAAGAAGGCGGCATTGTCGCCGTTAAACAAATAGCAATTATCGGCATACACGAAGGAATTCCCGGTTTCATCCTCAGAGAAGTCTCGCTTCTCAAAGAGTTGAACCATCCCAACATTGTCAGGTTGTTGAGAGTAATTTCCATGAACGACAAATACGTGAATCTCGTTTTTGAGCAGCTTGATTGTGATCTTCATCAGTACATTTATAATCGTCGTTACCCTAAGGATTCGATGACTAGAAAGAGTTTGCTGCATCAAATACTCTCTGGCGTGGCATACTGTCATGCTCATAAGATTCTCCACAGAGATTTGAAACCAAGGAATTTGCTGGTTGATCTTTCTAAAATGACAGTCAAGCTGGCTGATTTCGGTTTGGCTAGAGAATTTGCAGATCCTGACACGTTATATACTGACAAAATAGCAACTCGCTGGTATAGGGCACCTGAAATCTTGTTTGACTCCCGTCGATATTCAACCCCAGTTGATTTGTGGTCAGTAGGCTGTATATTTGGTGAGATGGTACTGGGAAAGCCTGTATTTCAAGCTATTAGTTGCCCGGATGAATTAGAGTCGATTTTCAGAATGTTAGGTGCCCCGTCAGAGGACACGTGGCCAGGAGTCACTGAATTGTGTACTCACCTTCAAAGCTATGCCGAATTTAAACCAATGGACCTGTCAACAATTTTTGCCGATCTTGAACCAGCTGGCGTTAGTCTTCTATCGGTAAGTTTCATTTGCTTCCTCATTTGGTTTTTGTTACCTGGTGCGAGAGGCTTGGGTTCATTTGCCCCTCATCACACTGTGTTAGCCATGTCATGCTATAAGGATGATGCTTTGCCTGGACCCAGTGAGAAGGATTTCTGCCGAAGCTGCTCTAAAGCATGCTTACTTTAA 1128 0.4424 MARTRLRMEWAESDSSSDSLIIRILECRFFRRARKKDEVTFSSGSFTSRRNLRGLGELEFLEELAEGGYGRVFRCRDLKEGGIVAVKQIAIIGIHEGIPGFILREVSLLKELNHPNIVRLLRVISMNDKYVNLVFEQLDCDLHQYIYNRRYPKDSMTRKSLLHQILSGVAYCHAHKILHRDLKPRNLLVDLSKMTVKLADFGLAREFADPDTLYTDKIATRWYRAPEILFDSRRYSTPVDLWSVGCIFGEMVLGKPVFQAISCPDELESIFRMLGAPSEDTWPGVTELCTHLQSYAEFKPMDLSTIFADLEPAGVSLLSVSFICFLIWFLLPGARGLGSFAPHHTVLAMSCYKDDALPGPSEKDFCRSCSKACLL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi150g00004 375 SMART serkin_6 58 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi150g00004 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Sebi150g00004 375 Gene3D Phosphorylase Kinase; domain 1 43 139 - -
Sebi150g00004 375 FunFam Mitogen-activated protein kinase 138 325 - -
Sebi150g00004 375 SUPERFAMILY Protein kinase-like (PK-like) 57 317 IPR011009 -
Sebi150g00004 375 PANTHER CELL DIVISION PROTEIN KINASE 59 299 - -
Sebi150g00004 375 ProSiteProfiles Protein kinase domain profile. 58 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi150g00004 375 Gene3D Transferase(Phosphotransferase) domain 1 140 323 - -
Sebi150g00004 375 Pfam Protein kinase domain 60 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi150g00004 Sebi-Chr150 101047 103510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi150g00004 55 319 Core Cell Cycle Gene Families AT3G48750 48.496 7.26e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Sebi150g00004 Pkinase 5.6e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi150g00004 K02206 - vvo:131617029 343.584