Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi150g00003 ATGAGTCCCTCATTGGTTGGATCCCACTGCCTTGGGGGGCTTATGCGATGTGGAAAAAGTTGTCGTTTGAGATGGATAAATTACCTTAGGCCTGATTTGAAGAGAGGGAATTTTACAGAAGAGGAAGAGGAAACTATAATAAGGCTACATGCGGCTTGGGGAAACAAGTGGTCAAATATTGCTTCCAATTTGCCAGGTAGGACTGACAATGAGATCAAGAATGTATGGAACAGCCACTTAAAGAAAAGATTGGCTAACAACAGAAACTCAAGGTCTAGTGTAGACGAATCCAAGCTGAAATCATCTGTATCATCCTTCTCTTCATCTTCACTTGAATCAAATTTCTCAAATGAGACATCAAATTCAGTTATGACTATGATAGAGAAAGATGAGCAACAATCAATGAAACAAGTGTTAGATGACCTTATTGGGGTCCCTGAGAACCCAAATGAGTCAGTAAATTCAGTATCTTGGAGTGAGTCAAACACCTTCAATTCAAGCCAGATTCTTGCTTATGAACCAAAACAACAAATGAGTTCTCCATCCAGAAACGTAGGAGCTTATGATGTTAACAATGTGCTACAAGAGGTGGATGAACCCCAAATTCTTGAAATTCCATTGGAGCCAAATTATGATATTGAGAAAATGTTGGAGAACATAGGAACCAATCAGTCAGATGTGATCCAATTACACCAAGTTGATGGTAACCAAACCTCAAATTTTGGACAAGAGAGTGTTCAAGATATTGAAACTTGGAAGTGGTTACTTGACTCTGAGAATGATACTGGATTAGGTGCATCAAAGGAGACAAACAAGGATATGTTTCAACAAATGAATAATGCAATTGACTCAGGAATGGAGCTTTATTCATATGATTTTGATGCAATGCCAACAACTGAGTCTGATCTTGAACTAGGTTATGTTCAATGGGGATCTTCTTGGCCTCATAATCCAAGTATTTAA 963 0.3842 MSPSLVGSHCLGGLMRCGKSCRLRWINYLRPDLKRGNFTEEEEETIIRLHAAWGNKWSNIASNLPGRTDNEIKNVWNSHLKKRLANNRNSRSSVDESKLKSSVSSFSSSSLESNFSNETSNSVMTMIEKDEQQSMKQVLDDLIGVPENPNESVNSVSWSESNTFNSSQILAYEPKQQMSSPSRNVGAYDVNNVLQEVDEPQILEIPLEPNYDIEKMLENIGTNQSDVIQLHQVDGNQTSNFGQESVQDIETWKWLLDSENDTGLGASKETNKDMFQQMNNAIDSGMELYSYDFDAMPTTESDLELGYVQWGSSWPHNPSI 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi150g00003 320 SMART sant 34 82 IPR001005 -
Sebi150g00003 320 SUPERFAMILY Homeodomain-like 16 85 IPR009057 -
Sebi150g00003 320 Pfam Myb-like DNA-binding domain 35 80 IPR001005 -
Sebi150g00003 320 CDD SANT 48 80 IPR001005 -
Sebi150g00003 320 Gene3D - 5 34 - -
Sebi150g00003 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 84 IPR017930 -
Sebi150g00003 320 Gene3D - 37 105 - -
Sebi150g00003 320 ProSiteProfiles Myb-like domain profile. 30 80 IPR001005 -
Sebi150g00003 320 PANTHER MYB DOMAIN PROTEIN 55 13 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi150g00003 Sebi-Chr150 36768 38787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi150g00003 13 218 MYB Transcription Factor Family AT1G79180 46.635 1.66e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sebi150g00003 Myb_DNA-binding 7.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi150g00003 K09422 - gmx:100805511 267.7