Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi14g00170 ATGAATTGCTTTTACTACTTCAAAGACAAATCCAGGAGCAGGAGGCAAAGATCAGCACCTGAACTGAAAAAGCAAGAGAAACTCCAGTTTTCAGGGGATGAAAGAGTCACCAAGTCTTCATGCTCATCTGCCTCACCTCGCGGTATACCAGAGCTGTATGAGGAGAAGGCTCAGAATTTAAGGGCCTTCTCCTTCACAGAGCTCAAACGTGCAACAAATGATTTCAGCAGGCTTCTTAAGATAGGAGAAGGTGGATTTGGAAGTGTATTTAAAGGTTCAATCAAGCCTGTTGATGGGGATGGTGATCCTATTTTAGTTGCCATCAAAAGGCTTAACAAGGATGCATTACAGGGTCATAAGCAATGGTTGACTGAAGTTCAGTTTCTTGGTGTTGTGGAGCACCCAAATCTTGTCAAGCTTATTGGATACTGTGCTTTGGATGGTGAAAGAGGCATCCAGAGACTACTTGTGTATGAATACATGCCGAATAAAAGCTTAGATTTTCATCTTTTCAATAAAGCACGTGATCCTCTTCCTTGGAAAACAAGACTTGAAATAGCACTTGGAGCAGCTCAAGGGTTATCTTATTTGCATGAAGAATTAGAAATTCAGGTCATATATCGAGATTTTAAATGTTCAAATGTACTACTGGATGAAAATTTTAAGCCAAAACTTTCTGATTTTGGACTTGCTAGGGAGGGACCAGTAGCTGGGAATACTCATGTTTCAACTGCTGTGATGGGAACATATGGTTATGCTGCTCCAGATTACATAGAGACCGGCCATCTCACTGCCAAGAGTGATGTGTGGAGTTTTGGTGTGGTGCTATATGAAATACTTACCGGGAGGCGTTCATTGGAAAGAAACAGGCCCAAAACAGAGCAGAAACTTTTGGAGTGGGTGAAGCAATATCCTCCTGATAGCAAAAAGTTTGATTTGATAATGGATGCAAGACTTGAAGGACAATATTCCATTAATGTAGCACGAAAATTCGCCAAACTCGCGGATCATTGCCTGCGTAAGAGTGCGAAAGATCGGCCAACAATGAGTCAGGTGGTAGAGATATTGAAGCAGATAATCCAAGATGAAGAGCACCCTTAA 1101 0.4169 MNCFYYFKDKSRSRRQRSAPELKKQEKLQFSGDERVTKSSCSSASPRGIPELYEEKAQNLRAFSFTELKRATNDFSRLLKIGEGGFGSVFKGSIKPVDGDGDPILVAIKRLNKDALQGHKQWLTEVQFLGVVEHPNLVKLIGYCALDGERGIQRLLVYEYMPNKSLDFHLFNKARDPLPWKTRLEIALGAAQGLSYLHEELEIQVIYRDFKCSNVLLDENFKPKLSDFGLAREGPVAGNTHVSTAVMGTYGYAAPDYIETGHLTAKSDVWSFGVVLYEILTGRRSLERNRPKTEQKLLEWVKQYPPDSKKFDLIMDARLEGQYSINVARKFAKLADHCLRKSAKDRPTMSQVVEILKQIIQDEEHP 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi14g00170 366 SUPERFAMILY Protein kinase-like (PK-like) 58 356 IPR011009 -
Sebi14g00170 366 MobiDBLite consensus disorder prediction 12 33 - -
Sebi14g00170 366 PANTHER OS01G0588500 PROTEIN-RELATED 27 359 - -
Sebi14g00170 366 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 161 366 - -
Sebi14g00170 366 Gene3D Phosphorylase Kinase; domain 1 49 160 - -
Sebi14g00170 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Sebi14g00170 366 PIRSF ILK 55 365 - -
Sebi14g00170 366 CDD STKc_IRAK 81 359 - -
Sebi14g00170 366 Pfam Protein tyrosine and serine/threonine kinase 80 356 IPR001245 GO:0004672|GO:0006468
Sebi14g00170 366 ProSiteProfiles Protein kinase domain profile. 75 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi14g00170 366 MobiDBLite consensus disorder prediction 12 47 - -
Sebi14g00170 366 Gene3D Transferase(Phosphotransferase) domain 1 161 365 - -
Sebi14g00170 366 ProSitePatterns Protein kinases ATP-binding region signature. 81 109 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi14g00170 Sebi-Chr14 3363847 3368337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi14g00170 1 356 Glycoside Hydrolase AT3G07070 43.396 5.09e-93 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Sebi14g00170 PK_Tyr_Ser-Thr 4.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi14g00170 - - gmx:100784625 650.588