Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi14g00087 ATGTCTTGTGATTTTTCTTCATTGGAATCTGTTCAACATTACTTGCTTGAACTTGAACATGATTCCCAAACTCTCATCGATGCTTCCAACCACCAAATCTCCTATTCATTTCCGAGCCCTAACTCTAGTCATGATTCAACGCAGCAGGCCGTAATTAGTAACGGTGGTGGTGATGTGAAGAAATCACCCGCGGACAAAAAGGGGTACTCCGCATTGGCGCGTGAATCTCACGCGCCACCGATGTGGAAGCACTACCGAGGCGTGAGGCGTAGGCCGTGGGGGAAGTTCGCGGCTGAGATAAGGGATCCGAAGAAGAACGGTGCTAGAGTTTGGCTTGGGACTTATGAGACGGAAGAGGAAGCTGGTTTGGCTTATGATAGAGCTGCTTTCAAGATGCGTGGCAGTAAAGCCAAGCTTAATTTTCCCCATCTCATTGGCTCCCACGCGCCGCCGGAGCCGGTGAGAGTGGTGACAGATTCTAAGCGGAAGTCGCCGGAGCCTTGTTCACCGGCTTCGGAGTCACAAGGGTCAAAGAAAAGGAAGAGGCTAATTGATGTATTGAATAGGTTAGCAAAGTATAGAAGCCAAGTGCTGCATGTGCTTGAATTGAGTTCACCGTCAAATGATGTTGATCAATGGTTGAATCAGTTAGAAGAACACTTGACTGTGGTGTAA 675 0.4844 MSCDFSSLESVQHYLLELEHDSQTLIDASNHQISYSFPSPNSSHDSTQQAVISNGGGDVKKSPADKKGYSALARESHAPPMWKHYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETEEEAGLAYDRAAFKMRGSKAKLNFPHLIGSHAPPEPVRVVTDSKRKSPEPCSPASESQGSKKRKRLIDVLNRLAKYRSQVLHVLELSSPSNDVDQWLNQLEEHLTVV 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi14g00087 224 MobiDBLite consensus disorder prediction 36 75 - -
Sebi14g00087 224 SMART rav1_2 84 148 IPR001471 GO:0003700|GO:0006355
Sebi14g00087 224 PANTHER DNA-BINDING DOMAIN 49 178 IPR044808 GO:0003700|GO:0009873
Sebi14g00087 224 Pfam AP2 domain 84 134 IPR001471 GO:0003700|GO:0006355
Sebi14g00087 224 ProSiteProfiles AP2/ERF domain profile. 84 142 IPR001471 GO:0003700|GO:0006355
Sebi14g00087 224 CDD AP2 83 144 IPR001471 GO:0003700|GO:0006355
Sebi14g00087 224 FunFam Ethylene-responsive transcription factor 2 83 143 - -
Sebi14g00087 224 MobiDBLite consensus disorder prediction 146 180 - -
Sebi14g00087 224 MobiDBLite consensus disorder prediction 36 55 - -
Sebi14g00087 224 Gene3D AP2/ERF domain 83 143 IPR036955 GO:0003700|GO:0006355
Sebi14g00087 224 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Sebi14g00087 224 PRINTS Ethylene responsive element binding protein signature 124 144 IPR001471 GO:0003700|GO:0006355
Sebi14g00087 224 SUPERFAMILY DNA-binding domain 84 143 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi14g00087 Sebi-Chr14 1538393 1539067 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi14g00087 62 185 AP2-EREBP Transcription Factor Family AT2G44840 62.698 1.72e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi14g00087 AP2 2.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi14g00087 K09286 - gmx:100527194 262.307