Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi14g00086 ATGGCTTGTGATTTTTCTTCATTGGAATCTGTTCAACATTTCTTGCTTGAGCTTGAACATGATTCCCAAACCCTCATCGATGCTTCCAACCACCAAATCTGTTATTCATTTCCGAGCCCTAACTCTAGTGATGATTCAACGCAACAGGCCGTAATTAGTAACGGCGGTGATGTGAAGAAATCAACCGCGTGCAAAAAGGGTTCGTCCGCAATGGCGCGTGAATCTCACGCTCCACCGATGTGGAAGCGCTACAGGGGCGTGAGGCGTAGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGGGATCCGAAGAAGAACGGTGCTAGGGTTTGGCTTGGGACTTATGAGACGGAAGAGGAAGCTGGTTTGGCTTATGATAGAGCTGCTTTCAAGATGCGTGGTAGTAAAGCCAAGCTCAATTTTCCCCACCTCATTGGCTCCCACGCGCCGCCGGAGCCGGTGAGAGTGGCGGAAGCTTCGAAGCGGAAGTTGCCGGAGCCTTGTTCGGCGGCTTCGGAGGATGGTTCGGGGTCAAAGAAGAGGAAGAGGCTAGTTGATGTGTTGAATAGGTTAGCTAAGCGTCGAAGCCAAGTCCAGGTGTTTGAAATGGGTATAGGGGCAAATGATGTTGATGTTGATCAATGGTTGAATGATTGTGGTGTAATTTGGTGCTCATAA 675 0.5037 MACDFSSLESVQHFLLELEHDSQTLIDASNHQICYSFPSPNSSDDSTQQAVISNGGDVKKSTACKKGSSAMARESHAPPMWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETEEEAGLAYDRAAFKMRGSKAKLNFPHLIGSHAPPEPVRVAEASKRKLPEPCSAASEDGSGSKKRKRLVDVLNRLAKRRSQVQVFEMGIGANDVDVDQWLNDCGVIWCS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi14g00086 224 SMART rav1_2 83 147 IPR001471 GO:0003700|GO:0006355
Sebi14g00086 224 Pfam AP2 domain 83 133 IPR001471 GO:0003700|GO:0006355
Sebi14g00086 224 PANTHER DNA-BINDING DOMAIN 50 175 IPR044808 GO:0003700|GO:0009873
Sebi14g00086 224 MobiDBLite consensus disorder prediction 37 56 - -
Sebi14g00086 224 MobiDBLite consensus disorder prediction 157 180 - -
Sebi14g00086 224 SUPERFAMILY DNA-binding domain 83 142 IPR016177 GO:0003677
Sebi14g00086 224 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Sebi14g00086 224 PRINTS Ethylene responsive element binding protein signature 123 143 IPR001471 GO:0003700|GO:0006355
Sebi14g00086 224 MobiDBLite consensus disorder prediction 37 76 - -
Sebi14g00086 224 FunFam Ethylene-responsive transcription factor 2 82 142 - -
Sebi14g00086 224 ProSiteProfiles AP2/ERF domain profile. 83 141 IPR001471 GO:0003700|GO:0006355
Sebi14g00086 224 CDD AP2 82 143 IPR001471 GO:0003700|GO:0006355
Sebi14g00086 224 Gene3D AP2/ERF domain 82 142 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi14g00086 Sebi-Chr14 1530528 1531202 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi14g00086 40 221 AP2-EREBP Transcription Factor Family AT2G44840 47.179 2.94e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sebi14g00086 AP2 4.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi14g00086 K09286 - gmx:100527194 276.559