Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi14g00049 ATGCATGGGAAAAAAGACCAAGAGCATATAAGGAAAGGGCCATGGAAAGCAGAGGAAGATGAGGTGCTACTGAACCATGTCAAGAAGTATGGTCCCAGAGATTGGAGCTCCATTCGATCCAAAGGTCTTCTCCAAAGGACTGGCAAGTCCTGTCGTCTTCGTTGGGTCAATAAGCTCCGACCCAACCTCAAGAAATATAGTGTGTATCCAATTATCCATGGATGGTTCAAGGCACAATTTGGGAACAAGTGGGCTAAGATTGCATCCTATTTGTCAGGGAGAACAGATAATGATGTGAAAAATTTCTGGAGCAGTAGGCAAAAGAGGTTGGCTAGGATTCTACAGACATCAGCAACAAACTCCAAATCACAGAAAAACAAAACTAAAGTTCCAACACTTCTTGATGTCCCAACTTTGGAGGCTCCTAAGTTAAGTTCTTCATCAGAGGGAGAACCATCATCAAAGCCTCAGTCAAGCTCATTATCCTGCATTGAGAATTCTGAAGTCATCAAAATGGTGCCATTACCTGATCTAATAAAATCACTTCCTAGTTCTGACACAAGCCTTGTTGAACAAGAGTTTATTACCCCTTATGAGAGCTATAAAACCACTGAACAGATTTCTTTCCCTCAGATATCAGAAGTCCAAACTGATCTTACATTCTTAATGGGAAGCCAAGATCTCTTGCCCAGAATTGATGAGTCAAGTTTTATTGATGTCTTTGGCCCTTTGGATACATCTGAGTTTGGAATGGGTCCACAACACCCCATTGGGTTCCCTTTCTTTGAGCCAACAACAGGAAGTTGTAGAATTGGGAATACAATTGATAACTACAAAAACGGTGATAGCTTCTTTGATGATTTTCCAGAGGACTTGTTTGATCACATGGAGCCACCTGCAAGCCCACCAAAGCTCTGA 918 0.4194 MHGKKDQEHIRKGPWKAEEDEVLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKKYSVYPIIHGWFKAQFGNKWAKIASYLSGRTDNDVKNFWSSRQKRLARILQTSATNSKSQKNKTKVPTLLDVPTLEAPKLSSSSEGEPSSKPQSSSLSCIENSEVIKMVPLPDLIKSLPSSDTSLVEQEFITPYESYKTTEQISFPQISEVQTDLTFLMGSQDLLPRIDESSFIDVFGPLDTSEFGMGPQHPIGFPFFEPTTGSCRIGNTIDNYKNGDSFFDDFPEDLFDHMEPPASPPKL 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi14g00049 305 Gene3D - 75 132 - -
Sebi14g00049 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 63 IPR017930 -
Sebi14g00049 305 Gene3D - 12 65 - -
Sebi14g00049 305 Pfam Myb-like DNA-binding domain 15 65 - -
Sebi14g00049 305 FunFam Transcription factor GAMYB 72 132 - -
Sebi14g00049 305 SUPERFAMILY Homeodomain-like 12 107 IPR009057 -
Sebi14g00049 305 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Sebi14g00049 305 MobiDBLite consensus disorder prediction 141 162 - -
Sebi14g00049 305 Pfam Myb-like DNA-binding domain 79 103 IPR001005 -
Sebi14g00049 305 PANTHER TRANSCRIPTION FACTOR DUO1 4 304 - -
Sebi14g00049 305 CDD SANT 14 59 IPR001005 -
Sebi14g00049 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 111 IPR017930 -
Sebi14g00049 305 SMART sant 71 109 IPR001005 -
Sebi14g00049 305 SMART sant 11 61 IPR001005 -
Sebi14g00049 305 FunFam MYB transcription factor 12 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi14g00049 Sebi-Chr14 936806 938706 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi14g00049 1 302 MYB Transcription Factor Family AT3G60460 45.938 3.74e-69 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi14g00049 Myb_DNA-bind_6 6.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi14g00049 K09422 - gmx:100805384 424.861