Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi149g00089 ATGGGTAACGGGCACGGACATGGCCATGGCCATCGCAAACACCGTAATTCTGTCCCTCACAACACGGTTCCTCCTCCCTATATATATGGTCCTAGTTCTCAGCCCCAGCCATCATCAACAATCCCAAACCAGAACGTGGTTGCTTCCAATTCCAACATTATGAACTCTTTGCCGTACGCCCACGTCGACTCCACTCTCCGTGCCCTCGCCACCCCAGGCCGAGGGCTTTGGTCGCTTCGCAATCGGTGGACTTCACGGCCCCCTTTATCATATGATGGACCAGGATCATTGCGTGACGCATGTCGCAGAAAAGAACCTTTATGGATTGTATTTGAGGTTTCAGTGTTAGAAGGAGGAAGAGGGCCTGATGTTGATGGCATTCAGATCAAACCTAATTCAAAGCACATATGGATAGACCGTTGCAGTCTAAGTGATTTTGATGATGGCTTGATAGATATCACTAGAGAAAGCACTGATATCACTATTTCAAGGTGTCACTTTGCTCAGCATGACAAAACAATGCTCATTGGGGCAGATCCCTCACATGTTGGTGATAGATTGCATCAGGGTCACCATACACCATTGTTTTTTTCAATGGGACTCGACAGAGGCATCCTCGTGTTAGATTTGGAAAAGTACATCTGTACAATAATTACACCAGAAACTGGGGCATATATGCTGTTTGTGCAAGTGTGGAATCCAGGCCAGAAGAAGGTGGCATTTAAGTATCTTACTGAGAAGGCAGCAGACAAGGGAGCAGAAGCAAGTGGTCACATAAGTGAATACTATCCCACGTGGACTGTGGAACCTCCTACAGATGAGCTAAAACAGGTTCTTCATCACTGCACTGGATGGCAATCTGTTGCGAGGCCAGCAGATCAAACAGTTTGCGCAGAATAG 900 0.4711 MGNGHGHGHGHRKHRNSVPHNTVPPPYIYGPSSQPQPSSTIPNQNVVASNSNIMNSLPYAHVDSTLRALATPGRGLWSLRNRWTSRPPLSYDGPGSLRDACRRKEPLWIVFEVSVLEGGRGPDVDGIQIKPNSKHIWIDRCSLSDFDDGLIDITRESTDITISRCHFAQHDKTMLIGADPSHVGDRLHQGHHTPLFFSMGLDRGILVLDLEKYICTIITPETGAYMLFVQVWNPGQKKVAFKYLTEKAADKGAEASGHISEYYPTWTVEPPTDELKQVLHHCTGWQSVARPADQTVCAE 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi149g00089 299 Pfam Pectate lyase 119 178 IPR002022 -
Sebi149g00089 299 MobiDBLite consensus disorder prediction 1 42 - -
Sebi149g00089 299 SUPERFAMILY Pectin lyase-like 88 187 IPR011050 -
Sebi149g00089 299 Gene3D - 115 196 IPR012334 -
Sebi149g00089 299 MobiDBLite consensus disorder prediction 1 18 - -
Sebi149g00089 299 PANTHER PECTATE LYASE 18-RELATED 122 187 IPR045032 GO:0030570
Sebi149g00089 299 SMART amb_all 49 234 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi149g00089 Sebi-Chr149 1264544 1267198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi149g00089 92 296 Polysaccharide Lyase AT3G55140 43.357 9.61e-65 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi149g00089 K01728 - gmx:100814368 291.582