Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi149g00072 ATGGATTTGGCTAATAGCCTGATGCTGCTCTCTCGTCCCATGGAGTTTGAGTGCAAGACATGTCACCGCAAATTCTCGTCGTTTCAAGCCTTAGGTGGCCACAGGGCTAGCCACAAAAAGCCAAAGCTTGAAGGAGAAGAAGCGAAATCAGAGGGAAAAACACAGAATTTGTTGGGGAATAAAGCGAAGATGCATGAGTGTTCTATTTGTGGACAGGTATTCTCTTTGGGACAGGCTCTTGGAGGACACATGAGAAGGCACAGGGCTGTTGCCATGAATGAAGATAAAGGGTTTTGTCCTATAAACCAAGCTATTGCAAAAGCACCAGTGTTGAAAAGATCGAATAGTAAGAGGATTATGTGCTTGGAATTGGACTTGAATTTGACACCTTTGGAAAATGACTTGAAGTTGTTGTTTGGGAAGAAGGCTCCTCAAGTCGATCTTTCTTTGTTCTGA 456 0.4364 MDLANSLMLLSRPMEFECKTCHRKFSSFQALGGHRASHKKPKLEGEEAKSEGKTQNLLGNKAKMHECSICGQVFSLGQALGGHMRRHRAVAMNEDKGFCPINQAIAKAPVLKRSNSKRIMCLELDLNLTPLENDLKLLFGKKAPQVDLSLF 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi149g00072 151 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Sebi149g00072 151 PANTHER ZINC FINGER PROTEIN ZAT5 15 134 - -
Sebi149g00072 151 Pfam C2H2-type zinc finger 65 89 - -
Sebi149g00072 151 Pfam C2H2-type zinc finger 16 41 - -
Sebi149g00072 151 MobiDBLite consensus disorder prediction 37 51 - -
Sebi149g00072 151 SUPERFAMILY beta-beta-alpha zinc fingers 16 87 IPR036236 -
Sebi149g00072 151 ProSiteProfiles Zinc finger C2H2 type domain profile. 16 43 IPR013087 -
Sebi149g00072 151 Gene3D Classic Zinc Finger 14 87 - -
Sebi149g00072 151 SMART c2h2final6 65 87 IPR013087 -
Sebi149g00072 151 SMART c2h2final6 16 38 IPR013087 -
Sebi149g00072 151 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Sebi149g00072 151 MobiDBLite consensus disorder prediction 32 53 - -
Sebi149g00072 151 ProSitePatterns Zinc finger C2H2 type domain signature. 18 38 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi149g00072 Sebi-Chr149 1050243 1050698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi149g00072 15 148 C2H2 Transcription Factor Family AT2G37430 57.353 4.02e-44 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi149g00072 zf-C2H2_6 2.3e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi149g00072 - - gmx:100526874 216.468