LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi149g00058	ATGGCGGCATCGCGGCGGCTCCGGGAGCTGCAATCGCAACCGGGGAACAAGATCTGCGTCGATTGCTCCCAGAAGAACCCGCAATGGGCGTCGGTGTCGTACGGCGTCTTCATGTGCCTCGAGTGCTCCGGCAAGCACCGTGGCCTCGGCGTCCACATCTCCTTCGTCCGATCCGTCACCATGGATTCCTGGTCCGAAATCCAGATCAAGAAGATGGAGGCTGGAGGCAATGACAACCTCAATGCCTTCCTCGCTCGCTATTCAATTCCCAAGGAAACCGACATCGTCACCAAGTACAACACCAACGCCGCCTCCGTTTACCGTGACCGGATCCAGGCCATCGCCGAGGGCCGTCCCTGGCGCGATCCGCCCGTTGTCAAGGAGAATCTATCCGCAGGCGGCAAGGGGAAGCCGCCGCTGACGCAGAATCGACGGAATAATGATTCCGGCTGGGACGATTGGGGTAATGACGGCGGTGTCGATATCAGGAGCAAGTCGACCGGGGACTTCAGGAACTTGAACGGTGGCAACGGCGGAGCGCCGGCGAGGTCGAGGTCGACGGAGGATATATATACGCGGTCGCAGCTGGAGGCTTCCGCGGCGAATAAGGAGAGCTTCTTCGCGAGGAAGATGGTGGAGAATGAGTCGCGACCCGAAGGGGTTCCACCGTCGCAGGGTGGGAAGTACGTTGGGTTCGGATCGAGCCCCGCGCCTTCGCAGAGGAGCAATCCGCAAAACGACTATTTCTCTGTCGTTTCTCAGGGGATTGGCAAATTGTCATTGGTTGCTGCCTCTGCGGCTCATTCTGCTGCTAATGTTGTTCAGGCAGGCACAAAAGAGATCACTTCTAAGGTCAAGGAAGGTGGTTATGATCAAAAGGTCAATGAAACAGTCAATGTTGTCACTCAAAAGACATCAGAGATTGGACAAAGGACATGGGGTATAATGAAAGGGGTTATGGCTTTGGCTTCACAGAAGGTTGAGGAGTACACCCGAGATAACCCAAATTGGAAGGCGGATAACTGGCAACAGAACGAGAATGGTAGAAATGGTTACTATCAGGATTTCAATCAAGAGAACAAAGGCTGGAATTCTTCTACCGGAAGAGAACAATCTTCATCAGGGCAATTTAAAACTCATACCTCAAGCTCTTGGGACGATTGGGACCACAAAGATAGTAGGAAAGAGGAACCAACTAAAGGATCAACTCATTCATCTGCTGGGCAGTTTGGTACTTACAATTCAAGCTCTTGGGATGATTGGGACCACAAAGATTCTAGGAAGGAAGAACCACCTAAAGGATCGGCTCCCCATAATGATGGTGGTGGTTGGGCTGGCTGGGATAATGCCAAAGAAGATGGATTTGATAATTTTTATGAAGGTGCATCTAACAAGAAAGCTGTTGGTCATAATGGAAAATCAGATGCCTCTTGGACAGGGGGAGGCTTTCTCTAA	1455	0.5223	MAASRRLRELQSQPGNKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDNLNAFLARYSIPKETDIVTKYNTNAASVYRDRIQAIAEGRPWRDPPVVKENLSAGGKGKPPLTQNRRNNDSGWDDWGNDGGVDIRSKSTGDFRNLNGGNGGAPARSRSTEDIYTRSQLEASAANKESFFARKMVENESRPEGVPPSQGGKYVGFGSSPAPSQRSNPQNDYFSVVSQGIGKLSLVAASAAHSAANVVQAGTKEITSKVKEGGYDQKVNETVNVVTQKTSEIGQRTWGIMKGVMALASQKVEEYTRDNPNWKADNWQQNENGRNGYYQDFNQENKGWNSSTGREQSSSGQFKTHTSSSWDDWDHKDSRKEEPTKGSTHSSAGQFGTYNSSSWDDWDHKDSRKEEPPKGSAPHNDGGGWAGWDNAKEDGFDNFYEGASNKKAVGHNGKSDASWTGGGFL	484

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi149g00058	484	Gene3D	Arf GTPase activating protein	1	126	IPR038508	-
	Sebi149g00058	484	SMART	arf_gap_3	4	120	IPR001164	GO:0005096
	Sebi149g00058	484	MobiDBLite	consensus disorder prediction	213	246	-	-
	Sebi149g00058	484	FunFam	ADP-ribosylation factor GTPase-activating protein	1	129	-	-
	Sebi149g00058	484	MobiDBLite	consensus disorder prediction	402	417	-	-
	Sebi149g00058	484	MobiDBLite	consensus disorder prediction	336	382	-	-
	Sebi149g00058	484	PRINTS	HIV Rev interacting protein signature	35	52	IPR001164	GO:0005096
	Sebi149g00058	484	PRINTS	HIV Rev interacting protein signature	56	77	IPR001164	GO:0005096
	Sebi149g00058	484	PRINTS	HIV Rev interacting protein signature	16	35	IPR001164	GO:0005096
	Sebi149g00058	484	MobiDBLite	consensus disorder prediction	121	189	-	-
	Sebi149g00058	484	MobiDBLite	consensus disorder prediction	383	401	-	-
	Sebi149g00058	484	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED	1	405	IPR044519	GO:0005096\|GO:0016192
	Sebi149g00058	484	MobiDBLite	consensus disorder prediction	334	484	-	-
	Sebi149g00058	484	MobiDBLite	consensus disorder prediction	418	435	-	-
	Sebi149g00058	484	CDD	ArfGap_ArfGap1	3	117	-	-
	Sebi149g00058	484	Pfam	Putative GTPase activating protein for Arf	5	103	IPR001164	GO:0005096
	Sebi149g00058	484	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	4	120	IPR001164	GO:0005096
	Sebi149g00058	484	SUPERFAMILY	ArfGap/RecO-like zinc finger	5	112	IPR037278	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi149g00058	Sebi-Chr149	846899	850036	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi149g00058	5	83	C2H2 Transcription Factor Family	AT4G05330	51.250	2.22e-22	96.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi149g00058	K12492		-	gmx:100806519	827.009