Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi149g00014 ATGGCTACTCGAGGACAAGTCATTACCTGCAAAGCCGCGGTGGCATGGGAACCCAACAAGCCATTAACCATCGAGGACGTTGAGGTGGCTCCGCCACAGGCTGGGGAGGTTCGAGTCCAAATTCTCTACACTGCTCTCTGTCACACCGATGCTTATACTTGGAGCGGCAAGGATCCAGAAGGTCTCTTCCCATGTATACTTGGTCATGAGGCTGCAGGGATTGTGGAAAGTGTTGGGGAAGGTGTTACTGAAGTTCAGCCTGGTGATCATGTCATCCCTTGTTACCAGGCTGAATGTGGAGAGTGCAAGTTTTGCAAATCAGGCAAAACCAATCTGTGTGGCAAAATTCGTGCTGCCACTGGAGTTGGGGTCATGCTGAGCGATCGCAAGAGTCGTTTCTCTATCAATGGAAAGTCAATCTATCATTTTATGGGAACCTCCACATTTAGTCAATATACTGTTGTTCATGATGTTAGTGTAGCTAAGATTGACCCCAAAGCTCCTTTGGAGAAAGTTTGTCTTCTTGGATGCGGTGTTCCAACTGGCCTTGGAGCTGTCTGGAACACTGCAAAGGTGGAATCAGGGTCAATTGTTGCGGTTTTCGGTCTTGAAACTGTTGGGCTTGCCGTTGCAGAGGGTGCAAAAGCTGCTGGGGCATCACGGATTATTGGCATAGATGTTGATAGCAACAAGTTTGAAAGAGCAAAGAACTTTGGAGTCACTGAGTTTATTAATCCAAATGAACATGAGAAACCAATTCAGCAGGTAATAGTTGATCAAACAGATGGTGGAGTTGATTATAGTTTTGAGTGTATTGGAAATGTCTCAGTGATGAGGGCTGCTTTGGAATGCTGCCATAAGGGCTGGGGGACATCAGTTATTGTGGGTGTTGCAGCATCAGGGCAGGAAATATCAACTAGACCTTTCCAGTTGGTGACTGGGCGTGTCTGGAAAGGAACAGCTTTTGGTGGCTTCAAGAGCCGCTCACAAGTGCCTTGGCTTGTAGACAAGTACTTGAACAAGGAAATCAAGGTTGATGAGTACATCACTCACAGTTTGACTCTTGCGGAGATCAACAAGGCATTTGACCTCATGCATGAAGGAGGATGTCTCCGTTGTGTGCTTGCAATGCATGTGTGA 1140 0.4693 MATRGQVITCKAAVAWEPNKPLTIEDVEVAPPQAGEVRVQILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECGECKFCKSGKTNLCGKIRAATGVGVMLSDRKSRFSINGKSIYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVPTGLGAVWNTAKVESGSIVAVFGLETVGLAVAEGAKAAGASRIIGIDVDSNKFERAKNFGVTEFINPNEHEKPIQQVIVDQTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYLNKEIKVDEYITHSLTLAEINKAFDLMHEGGCLRCVLAMHV 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi149g00014 379 NCBIfam S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 377 IPR014183 GO:0006069|GO:0008270|GO:0051903
Sebi149g00014 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 182 320 - -
Sebi149g00014 379 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Sebi149g00014 379 Gene3D - 13 372 - -
Sebi149g00014 379 CDD alcohol_DH_class_III 8 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Sebi149g00014 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
Sebi149g00014 379 Pfam Zinc-binding dehydrogenase 206 329 IPR013149 -
Sebi149g00014 379 PANTHER ALCOHOL DEHYDROGENASE 5 375 - -
Sebi149g00014 379 SUPERFAMILY GroES-like 3 198 IPR011032 -
Sebi149g00014 379 Gene3D - 182 320 - -
Sebi149g00014 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 13 201 - -
Sebi149g00014 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Sebi149g00014 379 SUPERFAMILY GroES-like 326 375 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi149g00014 Sebi-Chr149 201950 204596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi149g00014 10 331 Monolignol Biosynthesis Gene Families AT1G72680 26.444 1.35e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi149g00014 K00121 - gmx:100793008 723.391