Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi149g00013 ATGGCGCTATGGATGGAAAAGGGTTCCGAGCCCTTGACTGAAACCGAGAAAGCAGACCTTGAAGCCATTGCTGCAATCAAAGAGTCTGCAGCCATTGAACTTAAGGAAAAGGGTAACCAATATGTGAAGATGGGTAAGAAGCATTACACTGATGCCATTAATTGCTACACAAGGGCAATCAATCAGAAAGCATTGAGTGACTCTGAGAACTCTATTATTTTTGCAAATAGAGCCCATGTCAATTTGCTGCTAGGAAATCTTAGACGTGCTCTCACAGATGCTCAAGAGGCAATAAAGTTGTGCCCCTCAAATATAAAGGCAATTTATAGAGCTGCCAAAGCATCTCTTTCACTGAATTTGTTGGCTGAAGCAAAAGAGCATTGTCAAAAGGGTCTTCAGTTGGACCCCAATAATGAGGAATTGAAGAAGCTTGATCTGCAGATTAGTCTGAAGATATCAGAGAATGAAAAGCATGAGGCTGAAGTCTCCAAGGCTGTTGCAGAGGCAAAGGAACTTGTGTCTGCAATAGAATCTAGAGGCTTGAAGATTGGAAAGGCAATGTACCGAGAACTAACTGGATTAAGAAAGCCTGTGTTAGATAAAAATAATATCCTTCATTGGCCTGTTCTTTTTCTGTATGCAGAGGTTATGTCCAGTGACTTCATTGAGGATTTCTGTGAGACTGACATGTTTTCGCTATCAAACGTATTTGCAGAAGATCAGCCACTGCCATGGGATGTTGAAAACAATTACAAACGCGAATTTATTGAATTATACTATGAGGCTGGTTCTGGACTTCATCTACCTAAGGAAAAACTTCTTCATTGTCTATTAGAGGGAACTGCAGCTTCTGATGAGGTAGGTGTTGGTGATGAAGAGAAAAATGCAGCTGAGGATCTTAAGCAAAACATGGGCTCCCCTAAATGGATCAAAGTAAATGAAAGGAAAACACTCCATGATGTTCTCGAAGACCCTAATTTCATCATTCCTGGGATCCCAGTCTTCTATGTTGTTTCCAAGCAATCCAGCTTTTATGGCAAGTTCAAAGCTGGAAAATGGGCTCCTCCAAATATATAA 1077 0.4085 MALWMEKGSEPLTETEKADLEAIAAIKESAAIELKEKGNQYVKMGKKHYTDAINCYTRAINQKALSDSENSIIFANRAHVNLLLGNLRRALTDAQEAIKLCPSNIKAIYRAAKASLSLNLLAEAKEHCQKGLQLDPNNEELKKLDLQISLKISENEKHEAEVSKAVAEAKELVSAIESRGLKIGKAMYRELTGLRKPVLDKNNILHWPVLFLYAEVMSSDFIEDFCETDMFSLSNVFAEDQPLPWDVENNYKREFIELYYEAGSGLHLPKEKLLHCLLEGTAASDEVGVGDEEKNAAEDLKQNMGSPKWIKVNERKTLHDVLEDPNFIIPGIPVFYVVSKQSSFYGKFKAGKWAPPNI 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi149g00013 358 SMART tpr_5 71 104 IPR019734 GO:0005515
Sebi149g00013 358 SMART tpr_5 105 138 IPR019734 GO:0005515
Sebi149g00013 358 SMART tpr_5 31 66 IPR019734 GO:0005515
Sebi149g00013 358 Pfam Tetratricopeptide repeat 106 138 IPR019734 GO:0005515
Sebi149g00013 358 CDD CTWD_Cns1-like 170 350 - -
Sebi149g00013 358 Pfam Cns1/TTC4 Wheel domain 200 264 IPR044059 GO:0051879
Sebi149g00013 358 Coils Coil 141 175 - -
Sebi149g00013 358 SUPERFAMILY TPR-like 22 159 IPR011990 GO:0005515
Sebi149g00013 358 Gene3D Tetratricopeptide repeat domain 24 180 IPR011990 GO:0005515
Sebi149g00013 358 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 14 355 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi149g00013 30 160 Calmodulin-binding Proteins AT3G25230 33.099 3.22e-09 56.6