Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi148g00039 ATGGTTGTGAACGAGAGGCCTTTAAAGAGGATGAAAAGGAGAGTCACCGCTGATCTCTACGACTTTCTCACTTTTCCGGCTGACATTGACGACAGATTTTCCGCCGACGTACCCTTCCGGAGCAGTGTTCACCGCTTCCTCTCTAACCATGCGCGCCTCACCATTCCGCCGTCGCTATTTCCCTCCCTGATGACGTGGCAGATATTGTTCCGGGTCGGATCTCTAGTAGACGGGTCAGACCTTTCGCCGTCCATGGTTGCCGTAGATATCGTCGAAGAAGACGTGACTCGATCTCGGAGCTCGGTTTACTGCGACCAGTGCCGAGTCGTTGGGTGGAGCGGTCATCCGGTGTGCCGTAAGCGGTATCATTTCATAATAAGGGCTGATTCAAGTAATGCCATTGAACCTTATCAACGACCTTGTTCTAAATGTGACAATCTTGTTCAATTATCTGAACCAAGGTGTAAATGGTGTAATTTTGAAATTACTGTTGATGATATAGAGGATTGGGTGTATCTTCAAATTGAGGATAACACCCATCTTCTACATGGTGTTATTCACTCCAATGGTTATGGTCACCTGCTTACACTTAATGGAAGAGAAGGAGGTTCAAAGCTTCTCTCAGGATCTGATATTATGGGTTTCTGGGATAGGCTTTGTGCCACACTTTCTGTTAGGAAAGTTAGTGTGATGGATTTGTCTAAAAAGTTTGGGCTTGAATATCGATTGCTTCATGCAATTACCAAAGGGCGCACTTGGTATGGCAACTGGGGTTATGAATTTGGCACTGGCAGCTATGCTCTAACTCAAGATGTTTACCAGAAAGCAGTGAATACCCTGTCATATATGCCCTTGTCCTCTTTCTTATTCCAGGGTCGTGGGACTCGAAATCGCCTACAGAGTGTCATCACTCTTTACCAATCTCTGGCTGATACTGAACTTCTAACAATTAAAGATCTCTTCTCCTTTTTGTTGACATTGATTGCGGAATTCCTCAAGCCCCTGATCACGAGAACATCTGAACAACATGAATGCACCAGCACTTCTAATGTTTTGTGTGCTTGGACAAGTAATGATGTTGAAGATGTGCAAAAAGCTTTCATTAAGGTGTTGCTTGCATCAAGTGCCTGTAGTGAGAACAAATGGGTGAGTTGGCGTGCTCTCAAGGGTGCATTATGCAGAGGGGTTGCTTCTCCTGAGCTTCTAGATTATAGTCTTAAGCACTTAGGAGGGAATTTAGTTGCCAATGGCATGGTAGTTCGATCACAATGCAATCCCATTTCTAGTGCGGTGGAGTTTAGGCTTGAACCATTGAGTAATATGCATAATGGAATTGGTGCAATCTCAAACTATCCATCAGAAGAGCAAGTGATATCTGATCTGAGGTTTTTATTTGATTCAATTGTTCATCCTGACAAAATGGTGAGCACTGGATCTCGGGTTATGAAGAAACGGGTGGCTGATTCAGCAAGGAAGCTCTTAGACTGTAAGCAATTCATGAAGGATTATTACAAGCCTGAAAAGGTGGAAGAACTGCCTTCAGCCATTAAGCTTTGGTGTAGTGTGGAGCTTTCTGATCAGCCTAAAGATGAACCATCCCCACCACCAGAGCTAATTATCTTGCCTTTGAATGCTACTGTTGCTAACCTTAAGAGTGAAGCCAATAGTGTTTTTCAAGAAGTATATGTGATGTATAAGAGATTTCAGGCCGAGAATCTCCTAGGATATGGATCAATTAGTGATTCGTACACCTTAAAATTCTTGCTTGGAACAAGTGGGTCTGTCCGAATTCAAGGAAAATGTCTAGCTAAACATGGACTAAACCGTTTCCGAATGGAAAGAGGAACTGAAACATGGAAAGTTGATTGCATTTGTGGAGCTAAGGATGATGATGGAGAAAGAATGTTAGCATGTGATACCTGTGGTGTTTGGCTACATACCAGATGTGCTGGGATTAAGAACTCTGATGCTATTCCTTCAAAGTTTGTGTGTATGAGATGCGTAAACTCCTACCGTAGGGAAGCCAAAAAACTGCAAGACTCTAATGGGGAAGCTTATAAATCCAACACAACCTGCAGAGGTGAAGTGGTGGCAACTGATAATCCAGCAATTGCTCGTAACATGACTGTAAATTTTGGTGTACGTTAA 2148 0.433 MVVNERPLKRMKRRVTADLYDFLTFPADIDDRFSADVPFRSSVHRFLSNHARLTIPPSLFPSLMTWQILFRVGSLVDGSDLSPSMVAVDIVEEDVTRSRSSVYCDQCRVVGWSGHPVCRKRYHFIIRADSSNAIEPYQRPCSKCDNLVQLSEPRCKWCNFEITVDDIEDWVYLQIEDNTHLLHGVIHSNGYGHLLTLNGREGGSKLLSGSDIMGFWDRLCATLSVRKVSVMDLSKKFGLEYRLLHAITKGRTWYGNWGYEFGTGSYALTQDVYQKAVNTLSYMPLSSFLFQGRGTRNRLQSVITLYQSLADTELLTIKDLFSFLLTLIAEFLKPLITRTSEQHECTSTSNVLCAWTSNDVEDVQKAFIKVLLASSACSENKWVSWRALKGALCRGVASPELLDYSLKHLGGNLVANGMVVRSQCNPISSAVEFRLEPLSNMHNGIGAISNYPSEEQVISDLRFLFDSIVHPDKMVSTGSRVMKKRVADSARKLLDCKQFMKDYYKPEKVEELPSAIKLWCSVELSDQPKDEPSPPPELIILPLNATVANLKSEANSVFQEVYVMYKRFQAENLLGYGSISDSYTLKFLLGTSGSVRIQGKCLAKHGLNRFRMERGTETWKVDCICGAKDDDGERMLACDTCGVWLHTRCAGIKNSDAIPSKFVCMRCVNSYRREAKKLQDSNGEAYKSNTTCRGEVVATDNPAIARNMTVNFGVR 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi148g00039 715 CDD PHD_MMD1_like 622 667 - -
Sebi148g00039 715 SUPERFAMILY FYVE/PHD zinc finger 613 671 IPR011011 -
Sebi148g00039 715 ProSitePatterns Zinc finger PHD-type signature. 623 667 IPR019786 -
Sebi148g00039 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 608 673 IPR013083 -
Sebi148g00039 715 Pfam PHD-finger 623 669 IPR019787 -
Sebi148g00039 715 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 681 - -
Sebi148g00039 715 SMART PHD_3 622 668 IPR001965 -
Sebi148g00039 715 ProSiteProfiles Zinc finger PHD-type profile. 620 670 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi148g00039 Sebi-Chr148 1048098 1051062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi148g00039 82 667 PHD Transcription Factor Family AT5G22260 29.288 1.83e-89 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi148g00039 PHD 3.1e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi148g00039 K26271 - gmx:100780558 1072