Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi148g00027 ATGGCTGAATTACTCAATGAGTGTATTATGCTGAAGGACATTGGGCCCAATATTCTGAAACCTGTTACCAGAGCACGTGTTAATCGTCTGTGGAGTGTCCCAAACATGAAGATTCCGCTTGAGATCAACTCTGTTGAGATTGTGTTGGTTGATTCACAGGGGTGTAAAATACAAGCAACAATACTAAGGGAGTTGGTGAACATCTTTCAAAGCAACATAGTTGAGGAGGGGAGTTACATTTTCTGTGATTTCGATGTGGTTAGGAACGTTGGGAGCTATAAGCCAACGAGGCATCCGTTTAAGATTTTATTCAAAGAAGGGACTGTGGTGAAGCCAACTGAGCCAGATTTCGTGGTTAACTACTGTGTGAGTCCGATGGCAAACTGGGAGATAAGGAACTTTAAGGCTCACCTGGATTACTTAGTGGATGTTATTGGAGTTGTGACAACCATCTCACCTGAGAAGGAGTTTGGGTATGGCATTGGGGCTAAGAAATATGTTTCCTTGGAGGTGACAGATTACACTGGAAAGGTTGAGTGCATGTTGTTTGATGAGTATATCACCTTGGTGAAGGATTATCTAAAGTTTTGCGGCAGGCCCAGGCCAATCATTGTTATCCAGTATGCAAGGGTCATCCCTCTACCTGGGCCAGTGTTTGGTGAAATCGTGGTACAAAACTATTACAATGCGACTAGGGTAATGTTTAATGGGGCTATTCCTGAGGTCATGGAGTTTAAGAAGAGGATTGCTGCACTGGGGATGGCGTACGAGGATAAGCCAACAACATTTAGCCAGGGGACAGTTGAAATACCAATGAAGGATGATTTCCTTGTCCTCAATTCAAGGAAAAGAATTGGTGAACTGCAAGTGTGTAAAGAGGCCGGAGTGTTTGTAATATTGGCTAGAGTAGTTGGATTTATGGAGACTGGCCGGTGGTGGTACTATGCATGCAAGTGTAACCGACCTGCTTTCCCCAAGAATGATGTCTTTTACTGTCCAGGGTGTTGCAAGTTGGTTGCAAATGTTATTCACAGATATATGATAAAGGTCAAGGTATATGATGGGGATAAACATGCTTGCTTCAGATGTTTTGATGTTGATATCCACAGATTGCTGAAAAAATCCTGCAAGGACTTGCTAAATGATGTCCAGGCTGAACCTATGCGCGGAATTGAGTTCTTCCCATTGCCTGCCCGAGGCAACTTGGGTAAAGGGATCAGCATTGGCAGTGACAGCTTGGATTTGATACTGGGGTTGCCTGCCAAGCGGAAGAACTATGGGGAAGGGCCACTTTGTTACGACGGGGACGCGAGATGTGAGGTGATAAAGCCAGGTGGTGAGGGATGCTCGAAGACAATGGAAGAAATTGTATCATTCAAGAAAGAACCTGTGGAAGATGGTGAGCATGTTGGTGACCCTACAGTGTTGAAGTTGTCTGCTGTCTAA 1446 0.4454 MAELLNECIMLKDIGPNILKPVTRARVNRLWSVPNMKIPLEINSVEIVLVDSQGCKIQATILRELVNIFQSNIVEEGSYIFCDFDVVRNVGSYKPTRHPFKILFKEGTVVKPTEPDFVVNYCVSPMANWEIRNFKAHLDYLVDVIGVVTTISPEKEFGYGIGAKKYVSLEVTDYTGKVECMLFDEYITLVKDYLKFCGRPRPIIVIQYARVIPLPGPVFGEIVVQNYYNATRVMFNGAIPEVMEFKKRIAALGMAYEDKPTTFSQGTVEIPMKDDFLVLNSRKRIGELQVCKEAGVFVILARVVGFMETGRWWYYACKCNRPAFPKNDVFYCPGCCKLVANVIHRYMIKVKVYDGDKHACFRCFDVDIHRLLKKSCKDLLNDVQAEPMRGIEFFPLPARGNLGKGISIGSDSLDLILGLPAKRKNYGEGPLCYDGDARCEVIKPGGEGCSKTMEEIVSFKKEPVEDGEHVGDPTVLKLSAV 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi148g00027 481 SUPERFAMILY Nucleic acid-binding proteins 292 389 IPR012340 -
Sebi148g00027 481 Pfam Replication factor-A C terminal domain 302 384 IPR013955 -
Sebi148g00027 481 SUPERFAMILY Nucleic acid-binding proteins 137 253 IPR012340 -
Sebi148g00027 481 CDD RPA1_DBD_A_like 24 110 - -
Sebi148g00027 481 Pfam Domain of unknown function DUF223 46 117 IPR003871 -
Sebi148g00027 481 Gene3D - 278 395 IPR012340 -
Sebi148g00027 481 Gene3D - 125 256 IPR012340 -
Sebi148g00027 481 CDD RPA1_DBD_B_like 143 248 - -
Sebi148g00027 481 SUPERFAMILY Nucleic acid-binding proteins 11 116 IPR012340 -
Sebi148g00027 481 Gene3D - 6 112 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi148g00027 Sebi-Chr148 757900 760791 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi148g00027 47 393 Core DNA Replication Machinery Family AT5G08020 23.370 1.57e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi148g00027 - - lja:Lj1g3v3385890.1 235.343