Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi148g00001 ATGACAAGTAATTCAAACTCAAACTCAGGCTCACTGCAACTGCAACTGCAACAGCTTCAGAATCAGCCATTTGGGAATGGGAATGGGAATGAGAATGAGAGAACCTCACTTACACCCATAAACCCTTACCCTCTTCCAACCGCTCTCTACCAGGACCTCACTCGTGATTCAAACCTCTTCTGGGAAAAGCTTCAATCTTTTCACAAATCATTTGGCACCAAATTTAAGGTTCCTACTCTAGGAGGAAAGCCACTAGATCTCTATCGCCTATTCATAGAAGTAACATCTCGTGGTGGTCTTGAAAAGGTGATTGTAGATCGTAAATGGAAGGATGTGATTCTGGCCTTCAGGTTCCCTGATACCATAACAAGTGCATCATTTATGGTGCGCAGATACTATCTTTCGTTGCTTTATCACTTTGAGCAAGTGTATTTTTTTCGGAAGCATGTCCCTCCTTCCTCAACACCTGATAGTCCAGCACAGACACTTGGTTCTGTAGTGCATGGAACAATTGATGGGAAATTTGATTATGGATATGTAGTTACAGTTAATCTGGGTTCTGAAGAGCTAAAAGGTGTCCTGTATCATGTTCCTGATAATGTGTCCCGGAGTACTCATGCAGAAAGCACACCTAGTACGCAGAATCGAAAGAGATCAAGATTAGCATTACGTGATCCATCTCGGCCGAAATCAAACAGGAGTGGTTACAATTTCTTTTTCGCTGAGAATTATGCCAGGCTAAAGCCCTCGTTTTATGGGCAAGAGAGAGCAATTAGTAAGAGGATTGGGTTTCTGTGGAGCAATCTGACAGAAGCAGAAAGACAGGTTTATCAGGAGAAAGGGGTGAGAGATAAGGAAAGATACAAGACTGAAATGTTGGACTACAAATCCAATAATTCAACTCCTCAACCTCAATAG 918 0.4227 MTSNSNSNSGSLQLQLQQLQNQPFGNGNGNENERTSLTPINPYPLPTALYQDLTRDSNLFWEKLQSFHKSFGTKFKVPTLGGKPLDLYRLFIEVTSRGGLEKVIVDRKWKDVILAFRFPDTITSASFMVRRYYLSLLYHFEQVYFFRKHVPPSSTPDSPAQTLGSVVHGTIDGKFDYGYVVTVNLGSEELKGVLYHVPDNVSRSTHAESTPSTQNRKRSRLALRDPSRPKSNRSGYNFFFAENYARLKPSFYGQERAISKRIGFLWSNLTEAERQVYQEKGVRDKERYKTEMLDYKSNNSTPQPQ 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi148g00001 305 CDD HMG-box_AtHMGB9-like 229 295 - -
Sebi148g00001 305 MobiDBLite consensus disorder prediction 280 305 - -
Sebi148g00001 305 SUPERFAMILY ARID-like 52 154 IPR036431 GO:0003677
Sebi148g00001 305 Gene3D - 48 155 IPR036431 GO:0003677
Sebi148g00001 305 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 229 296 IPR009071 -
Sebi148g00001 305 Pfam HMG (high mobility group) box 229 296 IPR009071 -
Sebi148g00001 305 SUPERFAMILY HMG-box 216 299 IPR036910 -
Sebi148g00001 305 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 26 303 - -
Sebi148g00001 305 CDD ARID_HMGB9-like 56 141 IPR045303 GO:0003677
Sebi148g00001 305 ProSiteProfiles ARID domain profile. 54 145 IPR001606 GO:0003677
Sebi148g00001 305 SMART hmgende2 228 297 IPR009071 -
Sebi148g00001 305 SMART ARID_2 51 141 - -
Sebi148g00001 305 Pfam ARID/BRIGHT DNA binding domain 58 141 IPR001606 GO:0003677
Sebi148g00001 305 SMART bright_3 55 146 IPR001606 GO:0003677
Sebi148g00001 305 Gene3D High mobility group box domain 211 303 IPR036910 -
Sebi148g00001 305 MobiDBLite consensus disorder prediction 202 217 - -
Sebi148g00001 305 MobiDBLite consensus disorder prediction 202 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi148g00001 Sebi-Chr148 3567 8449 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi148g00001 34 301 ARID Transcription Factor Family AT3G13350 52.159 8.40e-106 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Sebi148g00001 ARID 5.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi148g00001 - - adu:107491521 426.402