Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi147g00142 ATGGCTTCGGTTGGCGTGGCACCAACATCGGGCCTGAGAGAATCCAGCGGTGCTGATAGATTGCCAGAGGAGATGAATGATATGAAAATTAGGGATGATAGAGAAATGGATGCCGCCACCGTTGTTGATGGTAATGGAACAGAGACAGGGCATATCATTGTAACTACCATTGGAGGTGGAAATGGTCAGCCGAAGCAGACTATAAGCTATATGGCAGAACGGGTTGTTGGGCATGGATCATTTGGGGTTGTTTTCCAGGCTAAATGCTTGGAGACTGGTGAAACTGTTGCTATTAAAAAGGTACTTCAAGACAAGAGGTATAAGAATCGGGAGCTGCAAACAATGCGTCTTCTTGACCACCCAAACGTTGTCTGTTTGAAGCATTGTTTCTTTTCGACCACTGAAAAGGATGAACTATACCTTAATTTGGTACTTGAGTATGTTCCTGAAACAGTTTATCGCGTGATCAAACATTACAACAAGATGAACCAACGCATGCCACTGATATATGTGAAACTCTATACATACCAGATCTTTAGGGCATTATCTTATATTCATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTAGTTAATCCCCATACCCACCAAGTTAAATTATGTGACTTTGGAAGTGCAAAAGTCTTGGTCAAAGGCGAACCAAATATATCATACATATGTTCTAGATATTATAGAGCACCTGAACTTATATTTGGAGCAACTGAATATACTACAGCTATTGACGTTTGGTCTGTAGGTTGTGTATTGGCTGAGCTTCTGCTTGGACAGCCTTTGTTCCCTGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATCAAGGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAACTACACAGAATTTAAATTCCCACATATTAAAGCACATCCATGGCACAAGATCTTTCATAAGCGCATGCCACCAGAAGCTGTTGATTTGGTATCAAGACTACTGCAATACTCCCCTAACCTGCGGTGCAATGCTTTAGATGCCTTGACACATCCCTTCTTTGATGAGCTTCGTGATCCAAACACCCGCTTGCCAAGTGGTCGTTTCCTTCCACCATTATTCAATTTCAAATCTCATGAACTGAAGGGAGTCCCGGTTGAGACTTTGATGAAATTGATTCCAGAGCATGCGAGGAAGCAATGCCCGTTTCTTGGCTTGTGA 1221 0.4267 MASVGVAPTSGLRESSGADRLPEEMNDMKIRDDREMDAATVVDGNGTETGHIIVTTIGGGNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVCLKHCFFSTTEKDELYLNLVLEYVPETVYRVIKHYNKMNQRMPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPHIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCNALDALTHPFFDELRDPNTRLPSGRFLPPLFNFKSHELKGVPVETLMKLIPEHARKQCPFLGL 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi147g00142 406 FunFam Shaggy-related protein kinase kappa 150 398 - -
Sebi147g00142 406 Gene3D Phosphorylase Kinase; domain 1 55 149 - -
Sebi147g00142 406 Pfam Protein kinase domain 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi147g00142 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Sebi147g00142 406 ProSiteProfiles Protein kinase domain profile. 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi147g00142 406 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 29 400 - -
Sebi147g00142 406 SMART serkin_6 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi147g00142 406 Gene3D Transferase(Phosphotransferase) domain 1 150 398 - -
Sebi147g00142 406 CDD STKc_GSK3 65 357 IPR039192 -
Sebi147g00142 406 FunFam Glycogen synthase kinase-3 beta 54 149 - -
Sebi147g00142 406 ProSitePatterns Protein kinases ATP-binding region signature. 76 100 IPR017441 GO:0005524
Sebi147g00142 406 SUPERFAMILY Protein kinase-like (PK-like) 69 380 IPR011009 -
Sebi147g00142 406 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi147g00142 Sebi-Chr147 1657367 1660842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi147g00142 74 359 MAP Kinase Gene Family AT3G59790 34.354 1.17e-54 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Sebi147g00142 Pkinase 3.6e-64 CL0016