Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi147g00127 ATGTCAAGACGGTACAAGAGTACCGGAGTTGAAGCCGAACAAGGTCGTAAGAGGAGAGAGGATAACCTCATTCAGATCAGAAAGAACAAACGCCGACACACTCTCCTCAACAAGCGAAACCACCCTCTGCCTCTTCTTCACCATCATCATATTCATGATTCTGCTGCTGCCCCCTTTCCCCTCTCCAACACGTTGGAAGGTCATAATCATAATATTCCTGCCTTGCTGCAACGAATATGGTCCAACGACCCTGCTGCACAACTGGAGGCAACTGCTCAATTCAGAAAGCTACTATTATTAACCTTATCAGTAGACAGCCCTCAAATTGATGAGGTCATCGAGGAACGTCTCGTCTCTAGGTTTGTGGAGTTTTTGACAAACCATGATTTACCCAATTTGCAGAATGAGGCTGCATGGGCTCTGAGCAATATTACTTGGGGAAAATCTGAGCACAAAAGAGTTGTAATTAAACAAGGTGCTGTTCCCGTGCTTGTCAACCTTCTGCACTCCAGTACCATTGACGTCAAAGAAAAGGTGCTATGTTGTTTAGGTAATATTGCACTAAGCAATAGGGATGTGGTTCTTGATCATGGTGCACTCTTGCCAATACTCTCCCTGTTGGAGCACTTTAGAATATTACCTCTGTATCTGTTAAGGACTGCTACATGGGCTTTATCTAATCTCTGTAGTGGAAACCCTCCTCCACCTTTTCAACAGGTAAAGCCTGCCTTGCCTGTCCTTGGGCAACTCATCCACTTGCATGATGAAGGAATCATGAGCAATGCGTGCTGGGCTCTCTCTTACCTTTCAGATGGCACAATTGAAAAAATCCAAGCTCTCATTGAAGAAGGACTTTGCCCTAAACTTATCCACCTTCTCAACTCGCATCCATCACCTCTAGTTATTGAGCCTGCTCTTCGGACACTTGGAAATATTGTTTCTGGTAATGATGTTCAGACTCAGCTTGTAATTGACAATCAAATACTTCCTTCTCTTCAACGATTTCTGACACAAGATCACAAAAAAAGCATCAAGAGAGAAGCTTGTTGGACAATTTCAAATATAACAGCTGGGAATGAAGATCAAATACAGGCTGTCCTTGACGCCAATATTATTCCTGCACTTGTTGATCTTATTCACTATGGGGAGTTTGACATTAAGATGGAGGCTGCCTGGGCCATCAACAATGCCATTGTTGGAGGATCTCATTGGCAGATAAGGTTCCTTACGAGTCAAGGTTGCATTGAGGCACTATGTGATCTCTTGACCTGTCCAGATCCAAATGTTGTGAACGTTTGTCTAGAGGGACTGGGGCGCATTTTAAAGGTGGGAAAAGTTGATAAGGAACTGGGACTACATGGTGGAGTTAATGTTTATGCTCAAATGGTTGAAGATTGTAAAGGATTGGAAAATATTGAAAATCTGGAGACCCATCGCAACATTGAGATTTATGGTCTGGCTGTGAAGATTTTGGGGATATATTTTGTTGATGACTTGCAAGAAGATCCACCGGATGGTGGAGATGATTTTTCTTAA 1536 0.431 MSRRYKSTGVEAEQGRKRREDNLIQIRKNKRRHTLLNKRNHPLPLLHHHHIHDSAAAPFPLSNTLEGHNHNIPALLQRIWSNDPAAQLEATAQFRKLLLLTLSVDSPQIDEVIEERLVSRFVEFLTNHDLPNLQNEAAWALSNITWGKSEHKRVVIKQGAVPVLVNLLHSSTIDVKEKVLCCLGNIALSNRDVVLDHGALLPILSLLEHFRILPLYLLRTATWALSNLCSGNPPPPFQQVKPALPVLGQLIHLHDEGIMSNACWALSYLSDGTIEKIQALIEEGLCPKLIHLLNSHPSPLVIEPALRTLGNIVSGNDVQTQLVIDNQILPSLQRFLTQDHKKSIKREACWTISNITAGNEDQIQAVLDANIIPALVDLIHYGEFDIKMEAAWAINNAIVGGSHWQIRFLTSQGCIEALCDLLTCPDPNVVNVCLEGLGRILKVGKVDKELGLHGGVNVYAQMVEDCKGLENIENLETHRNIEIYGLAVKILGIYFVDDLQEDPPDGGDDFS 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi147g00127 511 ProSiteProfiles IBB domain profile. 1 48 IPR002652 GO:0006606|GO:0061608
Sebi147g00127 511 PIRSF Importin_alpha 2 508 IPR024931 GO:0005737|GO:0006606|GO:0061608
Sebi147g00127 511 MobiDBLite consensus disorder prediction 1 22 - -
Sebi147g00127 511 FunFam Importin subunit alpha 66 496 - -
Sebi147g00127 511 Pfam Armadillo/beta-catenin-like repeat 359 396 IPR000225 GO:0005515
Sebi147g00127 511 Pfam Armadillo/beta-catenin-like repeat 275 313 IPR000225 GO:0005515
Sebi147g00127 511 Pfam Armadillo/beta-catenin-like repeat 105 145 IPR000225 GO:0005515
Sebi147g00127 511 Pfam Armadillo/beta-catenin-like repeat 405 440 IPR000225 GO:0005515
Sebi147g00127 511 Pfam Armadillo/beta-catenin-like repeat 149 187 IPR000225 GO:0005515
Sebi147g00127 511 Pfam Armadillo/beta-catenin-like repeat 316 357 IPR000225 GO:0005515
Sebi147g00127 511 Pfam Armadillo/beta-catenin-like repeat 190 230 IPR000225 GO:0005515
Sebi147g00127 511 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 159 IPR000225 GO:0005515
Sebi147g00127 511 Gene3D - 70 496 IPR011989 -
Sebi147g00127 511 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 187 IPR000225 GO:0005515
Sebi147g00127 511 SMART arm_5 273 314 IPR000225 GO:0005515
Sebi147g00127 511 SMART arm_5 316 357 IPR000225 GO:0005515
Sebi147g00127 511 SMART arm_5 232 271 IPR000225 GO:0005515
Sebi147g00127 511 SMART arm_5 189 230 IPR000225 GO:0005515
Sebi147g00127 511 SMART arm_5 148 188 IPR000225 GO:0005515
Sebi147g00127 511 SMART arm_5 401 442 IPR000225 GO:0005515
Sebi147g00127 511 SMART arm_5 359 399 IPR000225 GO:0005515
Sebi147g00127 511 SMART arm_5 105 146 IPR000225 GO:0005515
Sebi147g00127 511 SUPERFAMILY ARM repeat 2 498 IPR016024 -
Sebi147g00127 511 Gene3D - 2 41 IPR036975 GO:0006606
Sebi147g00127 511 Pfam Importin beta binding domain 3 91 IPR002652 GO:0006606|GO:0061608
Sebi147g00127 511 PANTHER IMPORTIN ALPHA 5 497 - -
Sebi147g00127 511 Pfam Atypical Arm repeat 457 500 IPR032413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi147g00127 Sebi-Chr147 1535328 1537961 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi147g00127 117 382 U-box Gene Family AT1G23030 22.015 7.25e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi147g00127 K15042 - aew:130779640 574.318