Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi147g00120 ATGGAAGAATTGAAACCTGTTACTGTTTTGTCTGCTACTGCCTCTGAATTGCATCTAGGATCAGTGGCTAATAGCTACCTCCAGCTTCATCAACACAATATTGTAACGGCCGGGTCGGATCGGCTCAAGATCCAGATCGCGAATCACCCTCTTTATCCAGATTTAGTGTCTGCATACATAGAATGCCAAAAGGTTGGAGCACCACCAGAACTAGCATCCCTTTTGGAAGAAATAGGACGAGAAATCCACCCCATGAATGCACCCTGTGAGATAGGGCATGGTGCTGAACTTGACGAGTTCATGGAATCATACTGCCAAGTTCTTCACAGATACAAAGAGGAGTTGTCGAAACCCTTCAATGAAGCGAGTTTGTTTTTGGCGAATATGGAATCGCAACTCAGCAACCTTTGTAAAGGAACACTGACAAAGTCTTCGGATAACAACTTCTCAGATGAGGAATTATTAAGTTGCGGGGAAATCGAAGCAGTTGAAGGTCATGAATCTTGTGATAGTCACCCAGGTGATCAAAAGCTTAAAGAAATGCTCCTTCGTAAGTACAGTGGCCACTTTGGCAATTTGAGAAAGGAATTTCTAAAAAGAAGGAAAAAGGGTAAGCTGCCAAAAGATGCAAGGGTGACACTCATGGACTGGTGGAACACCCATCATAGATGGCCTTATCCTACGGAGGAGGAGAAAGTGCAGTTGTCAGACATGACTGGACTGGATCAAAAACAGATCAATAATTGGTTCATCAATCAGAGAAAACGGCATTGGAAACCAAATGAGGATATGCGATTTGCCATTCTGGACGGTGTAACTGACTGCGGCATAAGACCACCTATGTTTTTTTAG 852 0.4354 MEELKPVTVLSATASELHLGSVANSYLQLHQHNIVTAGSDRLKIQIANHPLYPDLVSAYIECQKVGAPPELASLLEEIGREIHPMNAPCEIGHGAELDEFMESYCQVLHRYKEELSKPFNEASLFLANMESQLSNLCKGTLTKSSDNNFSDEELLSCGEIEAVEGHESCDSHPGDQKLKEMLLRKYSGHFGNLRKEFLKRRKKGKLPKDARVTLMDWWNTHHRWPYPTEEEKVQLSDMTGLDQKQINNWFINQRKRHWKPNEDMRFAILDGVTDCGIRPPMFF 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi147g00120 283 ProSiteProfiles 'Homeobox' domain profile. 197 260 IPR001356 GO:0003677
Sebi147g00120 283 SMART KNOX1_2 40 84 IPR005540 GO:0003677|GO:0005634
Sebi147g00120 283 Pfam KNOX1 domain 42 83 IPR005540 GO:0003677|GO:0005634
Sebi147g00120 283 SMART ELK_2 177 198 IPR005539 GO:0003677
Sebi147g00120 283 SUPERFAMILY Homeodomain-like 199 267 IPR009057 -
Sebi147g00120 283 ProSiteProfiles ELK domain profile. 177 197 IPR005539 GO:0003677
Sebi147g00120 283 SMART HOX_1 199 264 IPR001356 GO:0003677
Sebi147g00120 283 CDD homeodomain 200 261 IPR001356 GO:0003677
Sebi147g00120 283 Pfam ELK domain 178 198 IPR005539 GO:0003677
Sebi147g00120 283 ProSitePatterns 'Homeobox' domain signature. 235 258 IPR017970 GO:0000981|GO:0006355
Sebi147g00120 283 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 58 266 - -
Sebi147g00120 283 Pfam Homeobox KN domain 217 256 IPR008422 GO:0003677|GO:0006355
Sebi147g00120 283 Pfam KNOX2 domain 91 137 IPR005541 GO:0003677|GO:0005634
Sebi147g00120 283 SMART KNOX2_2 87 138 IPR005541 GO:0003677|GO:0005634
Sebi147g00120 283 Gene3D - 195 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi147g00120 Sebi-Chr147 1434372 1439516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi147g00120 42 270 Homeobox Transcription Factor Family AT1G23380 53.333 1.38e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Sebi147g00120 KNOX2 1.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi147g00120 - - gmx:100803095 404.831