Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi147g00093 ATGTCTGGGGGAGATTCACGAAAGAGTAGGAGACTGGCCCTAATAGGGGTCTCAACGTTCTTACTGGTGGCTATGGTGGTTGCCGTTACCGTTAGTGTTGGGATCAGCAAGAATGGTTCCGGCGATGATTCAAAGGATAAAAACAAATCCCACGTGGCATCATCCATGAAAGCCGTGAAAACCATTTGTGCACCCACAGATTACAAGAAGGAATGCGAGGAAAGTCTCACAGCACAGGCTGGTAACACAACCGACCCAAGAGAACTCATCAAAATCGCCTTCAGCGTAACCATCAAAAGAATCAGTGAGGGCCTCGAGAAAACCCAGTTAATGCACGAGGTTGAGAGCGACCCTCGAACCAAAGAGGCACTCGACACGTGTAAGCAACTCATGCACCTCTCCATCGAGGAATTCAAACGGTCACTCGAGAGATTCGGTAAATTCGATCTCAACAACCTCGACAATATCCTAACGAGTTTAAAGGTATGGCTCAGCGGTGCAATCACGTACCAAGAAACGTGCCTTGACGCGTTTGAGAACACAACAACCGAAGCTGGTCACAAGATGAAGGACGTTTTGCAAACTGCCATGCACATGAGCAGTAACGGTCTTGCTATCATCACCGAGCTGTCAAAAACTCTCGATGAGATGCATCTCACAAAGCCTGGGAGACGCCTCTTGAAGGAAGCTGAGGATTTGGAAGTGCTTGGTCACGATGACTTTGAGCTTGAGCTTCCTGAATGGGTTGATGATCGCGTCGGTGTTCGTAGGCTCCTACGCATGACCGCAAGGAAACTCAGTGCTCACGTGACTGTTGCCAAGGATGGAAGTGGAAATTTCACCACCATCAACGAGGCATTGAAGCACGTGCCAAAGAATAACCTAAAGCCATTCGTTATCTACCTCAAGGAAGGCGTTTACGATGAGTACGTTGAAATCGCCAGAAGCATGACTCACGTGGTTTTCGTTGGTGATGGTGGTAAAAAGTCACGCATCACGGGCAACAAAAACTTCATAGATGGCGTCGGTACCTACAGAACCGCCACCGTTGCTGTTCTTGGAGATTACTTCGTTGGAATAGGCATTGGATTTGAGAATTCGGCTGGTGCAGAAAAACATCAAGCAGTTGCTTTGAGGGTACAAGCTGACAAGTCCATTTTCTACAAATGCAGAATGGATGGCTTCCAAGACACGCTTTATGCACACACCATGCGTCAGTTCTACAGGGATTGCGTTATCTCAGGCACTATTGATTTTGTCTTTGGTGATGCCGTTGCTGTTCTCCAAAACTGCACTTTCGTGGTCCGAAAGCCATTGTCAAACCAGCAATGTATTGTGACCGCACAAGGAAGGAAGGAGAGGAACCAGCCATCAGGATTAGTTATCCAAGGAGGATCCATTGTTTCAGATCCCAAATACTATCCAGTTAGGTTTGACAACAAAGCCTACTTGGCCCGTCCTTGGAAGAATTTCTCGAGAACTATCTTCATGGATACTTACATTGGTGATTTGATCACACCTGATGGTTACATGCCATGGCAGACATTAGAAGGGCTTTCAGGAATGGACACATGCTTCTATGCGGAGGTGAATAACCGTGGACCTGGTTCAGATAAGTCGAAGCGCGTGAAATGGCAAGGGGTGAAGACCCTGACATCACAGGGAGCGAAGAATTTCTTGGCATCAACGTTCTTCCACGGAGATGACTGGATTAAGGTTACTAGAATTCCTTATTACCCTGGCGTGGTCTCCCCCACTCATCATTGA 1767 0.4743 MSGGDSRKSRRLALIGVSTFLLVAMVVAVTVSVGISKNGSGDDSKDKNKSHVASSMKAVKTICAPTDYKKECEESLTAQAGNTTDPRELIKIAFSVTIKRISEGLEKTQLMHEVESDPRTKEALDTCKQLMHLSIEEFKRSLERFGKFDLNNLDNILTSLKVWLSGAITYQETCLDAFENTTTEAGHKMKDVLQTAMHMSSNGLAIITELSKTLDEMHLTKPGRRLLKEAEDLEVLGHDDFELELPEWVDDRVGVRRLLRMTARKLSAHVTVAKDGSGNFTTINEALKHVPKNNLKPFVIYLKEGVYDEYVEIARSMTHVVFVGDGGKKSRITGNKNFIDGVGTYRTATVAVLGDYFVGIGIGFENSAGAEKHQAVALRVQADKSIFYKCRMDGFQDTLYAHTMRQFYRDCVISGTIDFVFGDAVAVLQNCTFVVRKPLSNQQCIVTAQGRKERNQPSGLVIQGGSIVSDPKYYPVRFDNKAYLARPWKNFSRTIFMDTYIGDLITPDGYMPWQTLEGLSGMDTCFYAEVNNRGPGSDKSKRVKWQGVKTLTSQGAKNFLASTFFHGDDWIKVTRIPYYPGVVSPTHH 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi147g00093 588 CDD PMEI-like_3 61 212 - -
Sebi147g00093 588 SMART PMEI_2 54 206 IPR006501 GO:0004857
Sebi147g00093 588 FunFam Pectinesterase 55 211 - -
Sebi147g00093 588 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Sebi147g00093 588 Gene3D - 263 582 IPR012334 -
Sebi147g00093 588 FunFam Pectinesterase 263 582 - -
Sebi147g00093 588 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 212 IPR035513 -
Sebi147g00093 588 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 211 IPR035513 -
Sebi147g00093 588 PANTHER PECTINESTERASE 21 572 - -
Sebi147g00093 588 Pfam Plant invertase/pectin methylesterase inhibitor 58 206 IPR006501 GO:0004857
Sebi147g00093 588 SUPERFAMILY Pectin lyase-like 267 581 IPR011050 -
Sebi147g00093 588 Pfam Pectinesterase 269 568 IPR000070 GO:0030599|GO:0042545
Sebi147g00093 588 NCBIfam pectinesterase inhibitor domain 53 210 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi147g00093 Sebi-Chr147 1175262 1177193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi147g00093 5 584 Carbohydrate Esterase AT3G05610 49.060 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi147g00093 K01051 - gmx:100801686 959.903