Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi147g00064 ATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTATCAACAGAGCATACAAGAGAAGATGCAGTTAAACAACAATCCTTGATACTTGGCCACCTCCATACTTCAACTACAACAAGCAATGGTACAAACTCAAATTCACAAACCCCTCCTCCACCTGCTAAGAAGAAAAGAAGCCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATAGCACTATCGCCAAACACACTTTTGGCGACAAATCGATTCATATGTGAAATCTGCAACAAAGGGTTTCAAAGGGATCAAAACCTTCAATTGCACCGGCGAGGCCATAACCTGCCGTGGAAGCTTAAACAGAGAAGCAGCACACAAGTTCGAAAACGGGTTTATGTTTGTCCAGAACCTTCTTGTGTCCACCACAACCCAACAAGAGCACTGGGTGATCTCACTGGCATTAAAAAGCACTTTAGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAATACGCCGTCCAATCTGACTGGAAAGCCCATTCCAAAATTTGTGGTACAAAGGAATACAAATGTGACTGTGGCACCATCTTTTCCAGAAGAGATAGCTTCATCACCCACAGAGCTTTCTGTGATGCACTGGCAGAGGAGAACAACAAAGTGAATGCAGGAGCACAGTGCCAACCAATTATCCCAAACCCATTACCAACAATGAATAATAATAACCATTCCAATGAAAAGCAGCCATTATTACCACTCCCTCATGACCTCATGATGACATTAATGCCTACAGCAGCAGCAAAACCATTTAGCAACAATAATTCTCCCTCTCTTCAACTGAGTTCATCAAACAGAGGCTCAACTCATGATCAATATCACATGTCAGCAACAGCATTGCTTCAAAAAGCTGCACAAATGGGACCAATAGTGAGTAGTGAAAAAAGTTTTGTCACAACAATGGCACCACCATCATTCAGTACTAATGAGGTAATCATGAACCAGCAGTATGGTAGTCAACTACAGGACATTCCTAATTGTGATCAGTATAATTTCAATGGCAATAATATTGGGATGAGTGGTTTGGATATGTTCAATGCTATATTGGATCAAAGTAAGGCCTTATCGAAGATTATTGAGCAGAATAGAAGCAGTGTTTTGTGTCCAACAATTAATGTTAAAGGAAGTGATGAGGATGTGATGACTTTGGACTTGCTGGGGATAGGAGTAGGAGTAGGAGGACATGGCAATTTGTGTGGTGGAATCCAACAACAGTCAGAAACGGCTGCAAGAGATGATGAGATTTGGAGAAAGTACTGGTCAAACAAGAATAATATTGCAGGCTTTGAATCATTTTCAGCAACAAGTAGTTAG 1359 0.4143 MSNITSCDSGSLSTEHTREDAVKQQSLILGHLHTSTTTSNGTNSNSQTPPPPAKKKRSLPGNPDPSAEVIALSPNTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSSTQVRKRVYVCPEPSCVHHNPTRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALAEENNKVNAGAQCQPIIPNPLPTMNNNNHSNEKQPLLPLPHDLMMTLMPTAAAKPFSNNNSPSLQLSSSNRGSTHDQYHMSATALLQKAAQMGPIVSSEKSFVTTMAPPSFSTNEVIMNQQYGSQLQDIPNCDQYNFNGNNIGMSGLDMFNAILDQSKALSKIIEQNRSSVLCPTINVKGSDEDVMTLDLLGIGVGVGGHGNLCGGIQQQSETAARDDEIWRKYWSNKNNIAGFESFSATSS 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi147g00064 452 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 39 418 IPR031140 -
Sebi147g00064 452 Gene3D Classic Zinc Finger 62 129 - -
Sebi147g00064 452 FunFam protein indeterminate-domain 5, chloroplastic-like 137 216 - -
Sebi147g00064 452 FunFam protein indeterminate-domain 12-like 62 130 - -
Sebi147g00064 452 Pfam Zinc-finger double-stranded RNA-binding 83 105 IPR022755 -
Sebi147g00064 452 MobiDBLite consensus disorder prediction 264 285 - -
Sebi147g00064 452 SUPERFAMILY beta-beta-alpha zinc fingers 82 179 IPR036236 -
Sebi147g00064 452 MobiDBLite consensus disorder prediction 28 52 - -
Sebi147g00064 452 MobiDBLite consensus disorder prediction 1 68 - -
Sebi147g00064 452 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 105 IPR013087 -
Sebi147g00064 452 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Sebi147g00064 452 Gene3D Classic Zinc Finger 137 217 - -
Sebi147g00064 452 SMART c2h2final6 124 154 IPR013087 -
Sebi147g00064 452 SMART c2h2final6 83 105 IPR013087 -
Sebi147g00064 452 SMART c2h2final6 159 179 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi147g00064 Sebi-Chr147 866709 870229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi147g00064 42 216 IDZ Gene Family AT3G50700 82.486 6.56e-110 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi147g00064 zf-C2H2_jaz 6.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi147g00064 - - gmx:100785295 514.612