Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi147g00061 ATGCCTGTTATAATGTTCACTTACCTTAGCACCAATGTGCTGATAGATAAAGAACTTATGGCACCTACAAGGAAACCTAGGAGTATGAACAAGCGGTTTTCAGGTTTGAATGAGATTTCGCCTGAGAAAGATGGAGTTAGCTCAAATAAAAAAAAGCAAAGGAAGAAAAAGCTGTCTGATAAATTGGGATCTCAATGGAACAAGGAGGAACTAGAGAGGTTTTATGAAGCGTACAGGAAGTACGGGAAAGACTGGAAGAAGGTGGCTGCAGTTGTACGCAACAGGTCTGTTGAAATGGTGGAGGCTCTTTACAATATGAATCGGGCATACCTATCTCTGCCAGAGGGGACAGCTTCTGTTGTTGGCCTAATTGCAATGATGACAGATCACTATAATGTGCTGGAAGAGAGTGACAGTGAAAGGGAGAGCAATGATGCTTCAGGATCTGGAAAACCTATGAAACGAAAGCGTAGAAAAATTCAGCTTAGCGTAGAAAAAGATTCTGTCCAGTCTCCATTGATTGCTTCAAATGATGGTTGCCTCTCTCTTTTGAAGAGAAGACGATTCGATGGCAGCCAACCTCGAGCAGTTGGGAAAAGGACACCTCGCATCCCAGTTAACTACTCTTATAAGAAAGATGACAGGGAAAATTATTTTTCACCTAATAAAAGAAGGCTGAAGTCAGCTTTTGATGATAATGATGATGAAGTTGCACATGTCGCAGCTCTGGCATTAACTGAGGCTGCACAAAGAAGTGGCTCTCCCCAAGTATCTCAAATGCCATACAAAAGATCAGAGCAGAAGCCCTCTCCTGTTGGGACCTGGGGAAGAATGCACCAAGAGTCTGAGACAGTTCCTGGCAAGTTTTATGACACTTATGTGGATGAAGAGTGCTTGGAAGGCATAGGCACTGTTAAAGTTCATCAGAAAGGGAAAAAAAATTATGGAAAGAAGGAAAGAGGGGAAACTGTTGGAAATCATCTTCTTGATGAGGGTGGAGAAGCATGTAGTGGCACTGAAGAAGGACTTAATTTTAGTTTGAAGGAAAAGGTTGATATTGAGGTTACTAAGGCCAAACCAGAGCAATTCTCACTAAAAGGTCAGAGGAAAAGAAGCAAAAAACTTTTCTCTGGAGATGAAAGCTCTGCCTTGGATGCTTTGCAAACTTTGGCTGATTTGTCTCTAATGATACCGGCGTCTACAATGGAATCTGAATCATCAGTCCAATTGAAAGAAGAAAAAATGACTGTTGATAAAGATGAAAAGTCTGCTTTACCTGAAGGCACATCAACAAGCCAAAACAGAGATAAAATTAAACTCCCAGGTTTGAAACAAAAGATTGTTCATGCAGTCCATGGAGTTCAGGTTTCAACCTCCAAAAAATCAAAACTTGGAGGGGGATCAGTAGATGATGCTAATGCTCTCTTTGAATCAAAAGAGCAGTTTACCTCTGCTGATAGAACATGGAAAAGAAAGCGCAAATCCATGGTTTCAAAGGTTGTAGATGAAGAGAATAAGCCAGTGATTATAGGAAAACACACTGACACTGATCAGATTTTCACTCTGGCAAAACAATTGAAGTCAGTCAGATCATCAGAAAGTTCCCTGTGTAGTGACCAGAAAGATTTGAGAGTGTCAACTGCAGAAATTCTACCTGTAAAAGAAGTCAGTTCATCTACTAAACAAAGAAATAGACATAAGATGAGTTCACAGAAATCGTTCATGCCTAAAGAGAAATCTTCTGAGAACATATTGAAAACTCACCCTAATAAGTATTTGACCCCTGTCCAAGATAGGGCATTATTTATAAAGGAAAAGCTTTCAGGTTGCTTGTCATCTTATATGCTTCGCAGATGGTGTATGTTTGAATGGTTTTATAGCGCAATCGATTATCCGTGGTTTTCCAAAAGGGAGTTCATGGAGTACTTAAATCATGTTGGTCTAGGGAATATCCCGAGGTTAACACGTGTTGAGTGGAGTGTCATAAAAAGTTCCCTTGGCAAACCTCGCAGGAAACATTACACTGAACTGCGGACTGGTATGAAAGATGGACTTCCAACGGATTTAGCTAAACCTTTATATGTTGGACAACGAGTGATTGCTCTTCACTCAAAAACAAGAGAGATTCATGATGGAAGTGTGCTTACAGTTGACCATGAGAAGTGCAGGGTTCAGTTTGACCGTCCTGAATTGGGTGTTGAATTTGTCAAGGACATTGATTGCATGCCTTTGAATCCACTGGATAATTTGCCAGAAGCTCTGAGGAGGCAGATTGGTGCTGCTAAAGTACCTTGTATGAGTAAAGAACCACATATGAAAGGAAATTCAAGTTTTGGGGGCTGCGTGACATGTGCTTCAGATGGACCTTTGGGGAAGGCACCCACCTTGTCAAGTACTTTGGCTAAACAGGAAAAGGCTGATGTTAACCCTTCAGTTGCCCAAACAAAGGCTGGTGTTATTGATCACTTCTATACACAACAAGCAGTGTATACTCAACCTTGTATAGGGACAAATGATCAAGCTAAGGAAGCTGACATACATGCCCTTTCTGAGCTGATGCATGCTCTAGATAAAAGGAAGCATTACGCCACGGTTTCTAATGCCCTGCTTCATTTGAGGCAACGTAATACTTACCCAGGAAACTCTCTGCCACCATGGATGAAGCCCCAAGCAAGTTTCAATGTTCATGATGGCCTTCCCAGTACGTTGGATAGTTCTCTAACTCAAGAGTTAGGGTCAACTGTCATTGAAATTATCAAAGGATCCAGACTTAAAGCACATGCCATGGTGGATGCTGCATTTCAGGCATTGTCTTCAATGAAGGAAGGAGAAGATGCTTTCATGAGGATTGGGCAGGTATTGGATTGTATTGATTATCAGCAGTTGGTCCCCAACTCTAGGTTACCTGTGATCAAGTCCCAAGAGCAAGCGAATGGCAGTTTTGATTACCATAATAAGTCAATTTGCTGTTCATCTGAGCCTATACTCAATGATGCTTCTGGTCCAAAATTGCATCGTGATTCTGACAAAGTTGATACTCAAATTCCTTTGGATCTCATCACGTCCTGTGTTGCTACATTGATCATGATACAGACTTGTACTGAACGACAATATCCTCCAGCTGATGTGGCCCAGATATTAGATTCTGCTGTTACGAGCCTACACCCATGCAGTCCACAAAACCTTCCTATTATAGAGAAATTCAAATGTGCATGGGTAGAATTAAGACCCAGATGTTAG 3240 0.4136 MPVIMFTYLSTNVLIDKELMAPTRKPRSMNKRFSGLNEISPEKDGVSSNKKKQRKKKLSDKLGSQWNKEELERFYEAYRKYGKDWKKVAAVVRNRSVEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEESDSERESNDASGSGKPMKRKRRKIQLSVEKDSVQSPLIASNDGCLSLLKRRRFDGSQPRAVGKRTPRIPVNYSYKKDDRENYFSPNKRRLKSAFDDNDDEVAHVAALALTEAAQRSGSPQVSQMPYKRSEQKPSPVGTWGRMHQESETVPGKFYDTYVDEECLEGIGTVKVHQKGKKNYGKKERGETVGNHLLDEGGEACSGTEEGLNFSLKEKVDIEVTKAKPEQFSLKGQRKRSKKLFSGDESSALDALQTLADLSLMIPASTMESESSVQLKEEKMTVDKDEKSALPEGTSTSQNRDKIKLPGLKQKIVHAVHGVQVSTSKKSKLGGGSVDDANALFESKEQFTSADRTWKRKRKSMVSKVVDEENKPVIIGKHTDTDQIFTLAKQLKSVRSSESSLCSDQKDLRVSTAEILPVKEVSSSTKQRNRHKMSSQKSFMPKEKSSENILKTHPNKYLTPVQDRALFIKEKLSGCLSSYMLRRWCMFEWFYSAIDYPWFSKREFMEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRKHYTELRTGMKDGLPTDLAKPLYVGQRVIALHSKTREIHDGSVLTVDHEKCRVQFDRPELGVEFVKDIDCMPLNPLDNLPEALRRQIGAAKVPCMSKEPHMKGNSSFGGCVTCASDGPLGKAPTLSSTLAKQEKADVNPSVAQTKAGVIDHFYTQQAVYTQPCIGTNDQAKEADIHALSELMHALDKRKHYATVSNALLHLRQRNTYPGNSLPPWMKPQASFNVHDGLPSTLDSSLTQELGSTVIEIIKGSRLKAHAMVDAAFQALSSMKEGEDAFMRIGQVLDCIDYQQLVPNSRLPVIKSQEQANGSFDYHNKSICCSSEPILNDASGPKLHRDSDKVDTQIPLDLITSCVATLIMIQTCTERQYPPADVAQILDSAVTSLHPCSPQNLPIIEKFKCAWVELRPRC 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi147g00061 1079 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 96 IPR017930 -
Sebi147g00061 1079 CDD SANT 66 100 IPR001005 -
Sebi147g00061 1079 MobiDBLite consensus disorder prediction 135 164 - -
Sebi147g00061 1079 FunFam Protein ALWAYS EARLY 3 isoform A 22 118 - -
Sebi147g00061 1079 MobiDBLite consensus disorder prediction 407 425 - -
Sebi147g00061 1079 MobiDBLite consensus disorder prediction 250 279 - -
Sebi147g00061 1079 SMART DIRP_2 625 705 IPR033471 -
Sebi147g00061 1079 Pfam Myb-like DNA-binding domain 64 101 IPR001005 -
Sebi147g00061 1079 MobiDBLite consensus disorder prediction 26 62 - -
Sebi147g00061 1079 PANTHER LIN-9 20 1064 IPR010561 GO:0006351|GO:0017053
Sebi147g00061 1079 MobiDBLite consensus disorder prediction 250 265 - -
Sebi147g00061 1079 MobiDBLite consensus disorder prediction 556 581 - -
Sebi147g00061 1079 SMART sant 62 110 IPR001005 -
Sebi147g00061 1079 MobiDBLite consensus disorder prediction 403 435 - -
Sebi147g00061 1079 SUPERFAMILY Homeodomain-like 60 109 IPR009057 -
Sebi147g00061 1079 ProSiteProfiles SANT domain profile. 61 98 IPR017884 -
Sebi147g00061 1079 Pfam DIRP 624 671 IPR033471 -
Sebi147g00061 1079 Gene3D - 10 118 - -
Sebi147g00061 1079 MobiDBLite consensus disorder prediction 135 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi147g00061 Sebi-Chr147 795945 806043 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sebi147g00061 DIRP 6.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi147g00061 - - qsa:O6P43_011108 1307.35