Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi147g00059 ATGCATCAAGAACCTGATACAGAGGACAAGGATGTACCTAATTGTGCTTCTGCACCTCCTTGTGGGCCTGAGCTGTATCAAGATGCTGGTTCAAAACAGAAGCCTCCATGCATTAGTGAAGGACAAACAGAAAGAGTAAAAGCAAGTCTAGATGGCTCACAAGATATTTCTCAGATATCAGGCCCTGATGGGAAATCAAGTTTTACTCCCCTTAGTCAAATCGGATTTCGAGACCCTGCAAGTGTTGGCCATGGACAGCAATTGACATTACTTAGTATAGAGGTTCTTGCAGAATCTAGAGGAGACCTTTTACCTGATCCTCAATTTGATGGCATCAACATTGTAGCTCTTGGTTTTCAGAATGATAGTGATTCTATTATTGAAGTTCTTGTTCTTTTGCATTGTAAATTTGACCCTTGTCAGAGAAGTTATGATGGTCTATCAGGCTGCAAAGTATTGGTCTTCACTGATGAGGAGCACTTGTTGAAAGAATTTATAAAGATTGTGTCTTCATCTGATCCAGATATTTTGATGGGTTGGGATGTTCAGGGGAGTTCTCTTGGTTTTCTAGCAGAAAGGGCTTCACATCTTGGTTTAGGATTACTTAATGGTTTGTCTCGCACTCCATCTGATTCTTGGATTGCTTCTGAAGACACCAAAACTTCTGAGAAAGAGAGAGCAAAGCTGAACCTTGAGATATTAAACCAACTTGATATGGTGAATCGAACATCAGAACTTGCTCGTGTCTTTGGCATAGACTTTTTCTCTGTTCTCTCTCGAGGTTCACAATATCGTGTTGAATCCATGTTTTTGAGGTTGGCCCATACACAAAACTATGTTGCTATCTCACCTGGAAAACAACAGGTTGCTTCTCAACCTGCTATGGAATGCCTGCCGCTAGTGATGGAACCAGAGTCAGGATTTTATTCAGATCCTGTTGTTGTTCTTGACTTCCAATCTTTATATCCATCAATGATAATTGCATACAACCTTTGCTTTTGTACATGTCTTGGCAAAGTTGTGGCATCAAAGGCTAACACACTTGGGGTTAGTTCATTTTCACCAGAGCAACATGTTCTGCAGGATCTAAAAGACCAAATCTTGCTCAGTCCAAATGGTGTTATGTTTGTACCTCCCAAGGTTAGAAGAGGGGTTCTACCTCGCTTATTGGATGAAATCTTATCAACTAGAATAATGGTAAAACAAGCAATGAAAAAGTTGTCTCCTTCAGAGCAAGTTCTTCAGCGGATATTTAATGCAAGACAACTTGCTTTGAAGCTCATATCAAATGTAACATATGGTTACACTGCTGCTGGATTTAGCGGTCGGATGCCTTGTGCAGAACTTGCAGACAGTATTGTTCAATGTGGCCGTAGTACACTGGAAAAGGCTATATCATTTGTGAATCTACATGAAAAGTGGAATGCTAAAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTCCTTAAAGGACGCACTATCAAAGAGTCCTTCCAAATTGGGAGTGAGATTGCTTCTACTATCACTGCTATGAATCCCAGTCCTGTCACCCTGAAGATGGAGAAAGTTTATCATCCGTGCTTCCTCCTTACTAAAAAGCGTTATGTTGGCTACAGTTATGAAAGCCCTGATCAAATTGAACCTGTTTTTGATGCTAAAGGTATTGAGACAGTTCGCAGGGATACTTGTGGTGCAGTTGCAAAGACAATGGAGCAGTCTTTGAGACTCTTTTTTGAACATCGAGATTTATTGGAGGCTCATTCGTGTTTGATTAATGAGAAGGTGAAGACTTATTTGCAGCGTCAGTGGAAGAGGATTCTTTCAGGCAGATTCTCCCTTAAAGATTTTATCTTTGCAAAGGAGGTTCGCTTGGGTACCTACAGTGCAAGGATCTCATCACTTCCTCCTGCTGCAATTGTGGCTACTAAGGCAATGGGGGTTGATCCTAGGGCAGAACCACATTATGCTGAGAGAATACCTTACATTGTAATCCATGGAGAGCCCGGAGCACGCCTGGTTGATATGGTTGTGGATCCATTGGAAGTTTTGGCAATTGATTCCCCATTTAGAATAAATGATTTATATTACATCAATAAACAAATAATACCAGCTTTACAGCGGGTGTTTGGGCTTGTTCGTGCTGACCTGAACCAGTGGTTTGCAGAGATGCCCCGCCCTATAAGGGAAGCTTCTTCAAAGCATACATTCGCTCCAAACTCCCATCGAACCAGAATTGATTCTTACTATCTCTCAAAACATTGTGTACTGTGTGGTGGGTTGGTCCAGGCATCAGCTCGTTTATGTAGTCAATGTTCTGAAAATGAAGTAGCTGCTGCGACAGCAGTGATTAGTAAGACTTCAAAGTTAGAGCAAGAGATGCAACGCCTTGTTGCTATATGTCACCATTGCGGAGGCGGGGATAGGCTTCTCGAAAGTGGTGTTAAGTGCACGTCCATTTCTTGCTCGGTGTTCTATCAGAGGCGGAAAGTTCAGAAAGAACTACTAGCTGCCACCAATGTTGCTGCAGGTAAAGGCTTCTATCCAAGATGTACGATGGAATGGTTCTGA 2571 0.4177 MHQEPDTEDKDVPNCASAPPCGPELYQDAGSKQKPPCISEGQTERVKASLDGSQDISQISGPDGKSSFTPLSQIGFRDPASVGHGQQLTLLSIEVLAESRGDLLPDPQFDGINIVALGFQNDSDSIIEVLVLLHCKFDPCQRSYDGLSGCKVLVFTDEEHLLKEFIKIVSSSDPDILMGWDVQGSSLGFLAERASHLGLGLLNGLSRTPSDSWIASEDTKTSEKERAKLNLEILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHTQNYVAISPGKQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVASKANTLGVSSFSPEQHVLQDLKDQILLSPNGVMFVPPKVRRGVLPRLLDEILSTRIMVKQAMKKLSPSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNLHEKWNAKVIYGDTDSMFVLLKGRTIKESFQIGSEIASTITAMNPSPVTLKMEKVYHPCFLLTKKRYVGYSYESPDQIEPVFDAKGIETVRRDTCGAVAKTMEQSLRLFFEHRDLLEAHSCLINEKVKTYLQRQWKRILSGRFSLKDFIFAKEVRLGTYSARISSLPPAAIVATKAMGVDPRAEPHYAERIPYIVIHGEPGARLVDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFGLVRADLNQWFAEMPRPIREASSKHTFAPNSHRTRIDSYYLSKHCVLCGGLVQASARLCSQCSENEVAAATAVISKTSKLEQEMQRLVAICHHCGGGDRLLESGVKCTSISCSVFYQRRKVQKELLAATNVAAGKGFYPRCTMEWF 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi147g00059 856 Gene3D Helix hairpin bin 380 439 - -
Sebi147g00059 856 Pfam DNA polymerase family B 254 710 IPR006134 GO:0000166|GO:0003677
Sebi147g00059 856 FunFam DNA polymerase 555 732 - -
Sebi147g00059 856 ProSitePatterns DNA polymerase family B signature. 480 488 IPR017964 GO:0000166|GO:0003676
Sebi147g00059 856 CDD POLBc_zeta 261 718 - -
Sebi147g00059 856 MobiDBLite consensus disorder prediction 46 72 - -
Sebi147g00059 856 SUPERFAMILY DNA/RNA polymerases 300 722 IPR043502 -
Sebi147g00059 856 PRINTS DNA-directed DNA-polymerase family B signature 313 326 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sebi147g00059 856 PRINTS DNA-directed DNA-polymerase family B signature 478 486 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sebi147g00059 856 PRINTS DNA-directed DNA-polymerase family B signature 422 434 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sebi147g00059 856 Gene3D - 225 296 IPR036397 GO:0003676
Sebi147g00059 856 Gene3D - 119 224 IPR036397 GO:0003676
Sebi147g00059 856 SUPERFAMILY Ribonuclease H-like 88 276 IPR012337 -
Sebi147g00059 856 Gene3D Palm domain of DNA polymerase 299 544 IPR023211 -
Sebi147g00059 856 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 32 213 IPR030559 GO:0006281|GO:0016035|GO:0019985
Sebi147g00059 856 Pfam DNA polymerase family B, exonuclease domain 88 242 IPR006133 -
Sebi147g00059 856 SMART polmehr3 86 492 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sebi147g00059 856 FunFam DNA polymerase zeta 380 439 - -
Sebi147g00059 856 Pfam C4-type zinc-finger of DNA polymerase delta 755 828 IPR025687 -
Sebi147g00059 856 Gene3D - 556 736 IPR042087 -
Sebi147g00059 856 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi147g00059 Sebi-Chr147 765831 779556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi147g00059 227 838 Core DNA Replication Machinery Family AT5G63960 31.664 5.96e-78 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi147g00059 K02350 - gmx:100777934 1139.41