Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi147g00056 ATGCAAGACATTTTGGGATCAGTTCGCCGATCACTGGTATTCCGTCCTTCGCCGGAGAACGAAGAACACTCACTTGGAGTCGGAGGAACCCTAGTTGATAAGATCAGTTATTGCATCCGCAGTTCTAGAGTCTTCTCCAAACCATCGCTGCCGTCTCCGCCCGTTCCCAAGGACACTGCGCCTCCGATCCGATGGCGCAAGGGCGAGTTGATCGGTTGCGGCGCCTTTGGCCAAGTGTACGTTGGAATGAATCTCGATTCCGGAGAGCTTCTTGCAGTCAAACAGGTTTTGATTGCAGCAAGTAGTGGTTCGAAGGAGAAGGCACAGGCTCACATAAGAGAGCTTGAGGAAGAAGTTAAACTGCTTAAAGATCTTTCACATCCCAACATTGTTAGATATTTGGGTACGGTTAGAGAAGAGGACACCTTAAATATTCTCCTGGAGTTTGTTCCTGGTGGATCCATATCATCACTATTGGGGAAGTTTGGAGCTTTCCCTGAGGCTGTCATAAGAACTTACACGAAGCAGTTACTGCTTGGACTTGAGTACTTGCACAAAAATGGAATCATGCACAGAGATATTAAGGGGGCCAATATTCTTGTAGATAATAAAGGGTGCATAAAACTTGCAGATTTTGGAGCATCCAAACAGGTCGTTGAGCTGGCTACCATTTCCGGTGCCAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGGCATAGCTTCTCTGCTGACATATGGAGCGTGGGTTGTACTGTGATTGAGATGGCTACTGGAAAGCCTCCCTGGAGCCAGCAATACCAACAAGAGGTTGCTGCTCTCTTCCATATAGGGACAACTAAGTCTCATCCACCAATCCCTGATCATCTCTCTGTTGGAGCAAAAGATTTTCTGCTAAAGTGTTTGCACAAGGAACCATTTTTGAGGCCATCAGCATCAGAACTTCTGCAGCATCCCTTTGTTACCGGTGAACATATGGATTCTCTTCCTACGTCATCTACTGTCATGGAAAATCTTGGGGCTTCTTCACCGTCCCATGCCCCAAATGTTGAATCCTTACTTTGTGGCTCAACAATAAATCCCCTGGATTCGGGAAATAAACAGTCATGGGGAATGAGCAATGATGATGACATGTGTGAGATTGATGACGAAGAAGAGTTCTCAGAGTGTGATATCAAATGCAAACCATTGATGTCAGATAACATTGAGAGCTTCAACCCGATGTCTGATCCCTCTGATGATTGGGGGTGTAAATTTGGTGCAAGTCCAGAACTGGAACAAAGAGAAGGTTTTGACACTGGTGAAAGTTACATGCCATCTGGTCAGTCGGGGGCTAACGAGGGGCAGAAAGATTTCTCCTTTCCATCTGTGACACCTCAGACACCATCCCTGTCAGAGGAAGATGATGAGCTCACAGAGTCAAAAATTAAAGCCTTTTTGGATGAGAAGGCTCTTGAACTGAAAAAACTGCAGACACCTTTATATGAAGAATTTTACAACAGTTTAAATACATCTTGTTCTCCGAAGGTGATTGATAGCATAAGTGATGATACTGCTGCTCGAAAGTTCTTGAAATTACCTCCTAAAAGCAGGTCACCTAGTCGGGTACCAATTAGCACTCCATCTAAAGCAGTTGAAAATGCTGGAAGTCCTGGAAGTAATGGCAGGTCCTCATCAACTGTTGGCAATGTAAATAATCATGGCTCACAGGATATACCAGCATCTCCCCTTAATGAATTTAAAGGACTGATAGTTGACTCCCAGCAGGAGCCCAATAGCCCAAGTATAAACTTTTCTGAGAGACAAAGGAAGTGGAAAGAAGAGCTCGACCAGGAGCTCGAGAGAAAGCGAGAAATGATGCGCCAAGCTGGTATGGGGGGAAAGACATCTTCACCAAAGGATCGAGCTTTACATCGGCAGAGAGAACGGACAAGATTTGCTTCTCCCAGCAAATAA 1977 0.4532 MQDILGSVRRSLVFRPSPENEEHSLGVGGTLVDKISYCIRSSRVFSKPSLPSPPVPKDTAPPIRWRKGELIGCGAFGQVYVGMNLDSGELLAVKQVLIAASSGSKEKAQAHIRELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPDHLSVGAKDFLLKCLHKEPFLRPSASELLQHPFVTGEHMDSLPTSSTVMENLGASSPSHAPNVESLLCGSTINPLDSGNKQSWGMSNDDDMCEIDDEEEFSECDIKCKPLMSDNIESFNPMSDPSDDWGCKFGASPELEQREGFDTGESYMPSGQSGANEGQKDFSFPSVTPQTPSLSEEDDELTESKIKAFLDEKALELKKLQTPLYEEFYNSLNTSCSPKVIDSISDDTAARKFLKLPPKSRSPSRVPISTPSKAVENAGSPGSNGRSSSTVGNVNNHGSQDIPASPLNEFKGLIVDSQQEPNSPSINFSERQRKWKEELDQELERKREMMRQAGMGGKTSSPKDRALHRQRERTRFASPSK 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi147g00056 658 CDD STKc_MAPKKK 64 328 - -
Sebi147g00056 658 Coils Coil 609 629 - -
Sebi147g00056 658 MobiDBLite consensus disorder prediction 443 472 - -
Sebi147g00056 658 FunFam Mitogen-activated protein kinase kinase kinase 2 64 356 - -
Sebi147g00056 658 SMART serkin_6 65 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi147g00056 658 MobiDBLite consensus disorder prediction 639 658 - -
Sebi147g00056 658 SUPERFAMILY Protein kinase-like (PK-like) 64 347 IPR011009 -
Sebi147g00056 658 MobiDBLite consensus disorder prediction 592 606 - -
Sebi147g00056 658 MobiDBLite consensus disorder prediction 531 658 - -
Sebi147g00056 658 Gene3D Transferase(Phosphotransferase) domain 1 64 357 - -
Sebi147g00056 658 MobiDBLite consensus disorder prediction 438 477 - -
Sebi147g00056 658 Pfam Protein kinase domain 66 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi147g00056 658 MobiDBLite consensus disorder prediction 607 629 - -
Sebi147g00056 658 FunFam Serine/threonine-protein kinase STE11 61 155 - -
Sebi147g00056 658 ProSiteProfiles Protein kinase domain profile. 65 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi147g00056 658 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 53 343 - -
Sebi147g00056 658 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Sebi147g00056 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Sebi147g00056 658 Coils Coil 98 125 - -
Sebi147g00056 658 MobiDBLite consensus disorder prediction 540 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi147g00056 Sebi-Chr147 710624 716034 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi147g00056 1 658 MAP Kinase Kinase Kinase AT1G54960 57.245 0.0 693
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Sebi147g00056 Pkinase 3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi147g00056 K20606 - gmx:100807537 1114.75