Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi147g00041 ATGGGCTTTTTCTCCATCTACATCCGTCAGTGCGCTGATACTCCCTCCAACAGCGTTCTCCCCCTCACCCACGCGCGTTCAAGGAGAGCAGCGCGTGGACTTGATCCTGCGGTCATCGAAACGTTCCCGATTCTAGAATATTCCGAGGTTAAGATGCACAAGATTGGAAAAGAAGCATTGGAATGCGCCGTTTGCTTATGCGAATTCGAAGACACCGAAACGCTGCGTTTGATCCCAAAGTGCGATCACGTTTTCCACCCTGAGTGCATCGATGAGTGGTTAGGTTCTCACACCACTTGCCCCGTTTGCCGTGCCAACCTCGTTCCGCAACCTGGCGAGTCCGTTGAGTCACGAGACACCGAAGCTCAAAACGACGCCGTTTCTCTCCAAAATCCACCAGAACAGTCAAACGCGGACGTTGACCGAGTCTTACCTGAGCCTGAAGTGATTCCCGTGGATAAAACTCTGAACCGAAACCGCACACGTGGTTCCCGGTCGAACCGGACGCGCCGTTTCCCGCGGTCTCACTCGACCGGTCATTCGTTGATCCAACCGGGTGAAAACACCGCACGGTTCACTTTGAGACTACCCTTGGAAGTGAGGAAACAGGTAATGAACCGGCAATTGCAACGTGCTAGCAGCTTGATTGTGTTGCCTAGAGAAAGTAGTTCAAGGCAGGGTTATCGAACCGGCGAGGGAAGTAGTAGAGGAAGGTTGAGACGATTGGACCGGAGTTTTAAATCAGACCGGTGGGTCTTCACTCGGAGTTTCAAATCAGACCGGTGGGTTTTTACGATGGCTCCACCGTTCTTAGTTAGGGCATCGTCGATTAAGACCCCGAAGGTGGGTAATGGGGACGGTGAAGGGACCTCTTCCAGCTCCACCGCCCCTATCATGCCGCCGTCAGCCGTTGACTCAGCCCGCCCTCCGGTTTGA 936 0.5385 MGFFSIYIRQCADTPSNSVLPLTHARSRRAARGLDPAVIETFPILEYSEVKMHKIGKEALECAVCLCEFEDTETLRLIPKCDHVFHPECIDEWLGSHTTCPVCRANLVPQPGESVESRDTEAQNDAVSLQNPPEQSNADVDRVLPEPEVIPVDKTLNRNRTRGSRSNRTRRFPRSHSTGHSLIQPGENTARFTLRLPLEVRKQVMNRQLQRASSLIVLPRESSSRQGYRTGEGSSRGRLRRLDRSFKSDRWVFTRSFKSDRWVFTMAPPFLVRASSIKTPKVGNGDGEGTSSSSTAPIMPPSAVDSARPPV 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi147g00041 311 FunFam E3 ubiquitin-protein ligase ATL6 22 110 - -
Sebi147g00041 311 MobiDBLite consensus disorder prediction 158 184 - -
Sebi147g00041 311 ProSiteProfiles Zinc finger RING-type profile. 62 104 IPR001841 -
Sebi147g00041 311 CDD RING-H2_EL5-like 61 104 - -
Sebi147g00041 311 MobiDBLite consensus disorder prediction 161 175 - -
Sebi147g00041 311 SMART ring_2 62 103 IPR001841 -
Sebi147g00041 311 MobiDBLite consensus disorder prediction 121 137 - -
Sebi147g00041 311 MobiDBLite consensus disorder prediction 277 311 - -
Sebi147g00041 311 SUPERFAMILY RING/U-box 61 110 - -
Sebi147g00041 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 109 IPR013083 -
Sebi147g00041 311 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 5 221 - -
Sebi147g00041 311 Pfam Ring finger domain 61 104 IPR001841 -
Sebi147g00041 311 MobiDBLite consensus disorder prediction 285 300 - -
Sebi147g00041 311 MobiDBLite consensus disorder prediction 111 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi147g00041 Sebi-Chr147 585122 586057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi147g00041 1 283 Rapid Response to Elicitors AT3G05200 47.766 3.68e-75 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi147g00041 K10664 - gmx:100781706 431.795