Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi146g00027 ATGGAAGCAAAACATAAATTAGCTAATTTCAAAGTTGGGCCTTTGCCAACCCTAATATATGTTCCTGACTTCATCTCAGATACTGACCAAACCTTTCTTCTCAACAATATTAATGGAGCCCCTGCATCAAAATGGAAGTTATTGAAAAATAGAAGGCTCCAGAATTGGGGTGGTGTTGTCCATGAGAAGGGCCTTCTACCTCAAGCTTTGCCTCCATGGTTAACAAATCTCACACAAAAGATATATGAAGAGTCAGGGCTATTCCCATCGGCAATCAATCATGTTCTCATCAATGAATACTTACCTAACCAAGGCATAATGCCACACCAAGATGGGCCTGCCTATTTTCCAGTTGTAGCCATTCTTTCACTTGGATCTCCTATTGTCATGGACTTCACACCCCATGCCAGATTGAAACTGGATTCCGAAGATGTTATCGACAAGGATTTAGATGGAGAAACTTCTGAGATTGGGAAAGATAAGTGGCTAGATGATCACTGCCCATTCTCTATTCTGTTGATGCCTCGCAGTTTACTGATATTCAAGGATAAGGCATACTCAGGTTATTTGCATGGTATAAAAGATTGTACGGTACATTCCTATGATGGGGCTGTAAATGAAACTGAAGCTTTGAAACTTATTGAATCAGATAGACACTTTTCTAGCTCAGAGGATGCAGTGGAATCAATAGGAAAGGAAGAGAACAAGAACATATTAAGAACATCCACTAGAGTTTCATTGACTTGTCGAATGGTTCCTAAAGTTCATAAAAATTTGTTTAGAGTTGCAATGACATTGAGGACCTCAGCGGAGTTTTCCTTGGCTCTAACTAACCTGGAAGGTGAAGTGGCTTATGAAAGAGCAGATTCAAGAACAGATTGCAAAGCTATGGTGAGATTTAATGTGAGTAAGGATGGAGTATGGAAAATTACAAAGTTAGAACTGAATCATAACCATGACTTTGTGCCACAAGAGCAAAGACATTTGCTACGTTCTATGAGAGGCGTATCAAATGCCAAAGGAGGCCTCATTAATTCCATGGTGAATGCAGGTATGAAAGTTACAAATATTTGGAGTTATTTGGGGGAAGAGGTTGGTGGATTTGATAATCTTGGTATTACAATGAAAGATATGCATAATTATGTCTACTCTGAAAAGTTGAAATTAATTGATGCTGGTGATGCTCAGGCTTTAGTGAATCACTTGCAAAGTAGACAGGCACAAGATGCAATGTTCTACTATAGTGTGCAATTAGACCAGGAATCACGTGGAAGCACTTCTATGGAGATTGGTGGGTGTAATAATGTGTCATATCATGAAGTTATTTTTAACCATATGCCTAATAAGAAGTATCAGGTAACATTTGACTCTTCCACTATGATGATTAATTGCAGCTGTCACAAGTTTGATTCTATGGGTATTCTGTGTAGTCATGCCTTGCGAATTTACAACATTAAAGATTCTAGCTCTAATGTCATTAACTCAATGACCAATGGTGATGATGCTGGTATTCTTTATCGCAATGCTATTATGAAGTCATTTTATAATCTGGTTTTGGAAACTCAAGAACACAAAGAAACTCAGCAAATTATGTGGAAATTGCTTAATATTGGAGTTGAGCAAGTGCAACAATGTATTGGTAAGCTCAATTTAAATTCAAATGCAGAAACCATTGAGAACAAATTCACTCAAATTGAGGATAATGAATGGGCTGCAATTTTTAATCCTCCTCTTGCAAAGACCAAAGGAATGTCTACTGCTCGCAAGAAGGGGCATTTTGAGAAAAGGAAGCGATCAACCACAAAAACAAAGCAAAATAAAGAGAAACAAAAAGAAGATGGGTTTTGTGCTGTTAATTCTTCTACAATTGAGCTAACTAATGTTTTGAATTGCATGGATAAGTCAGCAATCTTGTGA 1917 0.3766 MEAKHKLANFKVGPLPTLIYVPDFISDTDQTFLLNNINGAPASKWKLLKNRRLQNWGGVVHEKGLLPQALPPWLTNLTQKIYEESGLFPSAINHVLINEYLPNQGIMPHQDGPAYFPVVAILSLGSPIVMDFTPHARLKLDSEDVIDKDLDGETSEIGKDKWLDDHCPFSILLMPRSLLIFKDKAYSGYLHGIKDCTVHSYDGAVNETEALKLIESDRHFSSSEDAVESIGKEENKNILRTSTRVSLTCRMVPKVHKNLFRVAMTLRTSAEFSLALTNLEGEVAYERADSRTDCKAMVRFNVSKDGVWKITKLELNHNHDFVPQEQRHLLRSMRGVSNAKGGLINSMVNAGMKVTNIWSYLGEEVGGFDNLGITMKDMHNYVYSEKLKLIDAGDAQALVNHLQSRQAQDAMFYYSVQLDQESRGSTSMEIGGCNNVSYHEVIFNHMPNKKYQVTFDSSTMMINCSCHKFDSMGILCSHALRIYNIKDSSSNVINSMTNGDDAGILYRNAIMKSFYNLVLETQEHKETQQIMWKLLNIGVEQVQQCIGKLNLNSNAETIENKFTQIEDNEWAAIFNPPLAKTKGMSTARKKGHFEKRKRSTTKTKQNKEKQKEDGFCAVNSSTIELTNVLNCMDKSAIL 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi146g00027 638 Pfam FAR1 DNA-binding domain 281 322 IPR004330 -
Sebi146g00027 638 ProSiteProfiles Zinc finger SWIM-type profile. 451 487 IPR007527 GO:0008270
Sebi146g00027 638 SMART 26again6 462 489 IPR006564 GO:0008270
Sebi146g00027 638 SUPERFAMILY Clavaminate synthase-like 16 253 - -
Sebi146g00027 638 PANTHER ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 6 3 263 IPR032862 -
Sebi146g00027 638 Coils Coil 548 568 - -
Sebi146g00027 638 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 91 253 IPR005123 -
Sebi146g00027 638 MobiDBLite consensus disorder prediction 582 612 - -
Sebi146g00027 638 Pfam SWIM zinc finger 451 482 IPR007527 GO:0008270
Sebi146g00027 638 Pfam 2OG-Fe(II) oxygenase superfamily 55 250 IPR027450 -
Sebi146g00027 638 Gene3D - 10 258 IPR037151 -
Sebi146g00027 638 MobiDBLite consensus disorder prediction 585 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi146g00027 Sebi-Chr146 922091 928627 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi146g00027 2OG-FeII_Oxy_2 1.4e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi146g00027 K10768 - gmx:100793993 439.884