Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi145g00028 ATGACCAAAGCTGAAATGAACCATAATGATAATGAGCAACCTAAAAATTTGGAATCTAATGATGAAGGCTTGGTTCATACTGATGAGCAAGGTGGTCAACAATCTTATCAACAAGCTGAATGTTTAAAAAAGATAAATGAACTTACAGATTATGAAATTAGGGCCCTTGAGTTTGATTCGGAATATCATGCTTATGAATTCTATTCTGAGTATGCTAAAGTGATAGGATTTGTTGTCAGGAAAGGTGAAGTTTATCGTGATCGTAATGATGCTATCACAATGAGGCAATTGGTTTGTAATAGGCAGGGAGAGAGATGTGAGAAGCATTTAAATAGAACTGATAGAGTAAGGGAGGCTAAGCCAATAACTCGTACCAAATGTAATGCTAGGATTCATGTTCACTTAAACTATAAGACTAGGAAATGGAGGGTTGGCTTGTTTGAACCAGCTCATAATGATGAGTTGACTCCTGCAAATATGGTTCATTTGCTTCCTGCATATCGTGGCTTGAGTTTTGCAGATAAGGCACAGAGGTTTGAGGATTTGTGGAACAATGTCATTGTGAAAATGGACTTGGCAATAATAAATGGGTTAGAAAGGAAGGAAATTGAGAAAGTTGCTGCTTTGAATGTTATTAAGAGGTCTGAGTTTGCTGCTGCTTGTAACAGGCTTAACAAGGCAGCACACATTAATCCTTATAATCTTTTGAGAAACATTGAAGCTATTCACAAGTTGGCTGATCAGATGGAAAGGCAGAAAGGTGATGACATAAGAATTGATGATATTTCCAAGGTTGTTCGTGATCCTACAGTTGTTAAAACTAAAGGTGCTCCTCGAAAGACTAAGAAAATGAAGAAAAGAAGGAAATGCTCATACTGTAAACGTCCTGGACACACTGTTAGGACATGTCCTAAGTTTTCAAAACGTGACCAACTGGAAACTGTTGTTGAGGAGGACTCTTCCGTTGAAACAGATGAAGAATCAAGAGATGGAACTGGTTCTGTTGATATTGCTTCTTCCAAGCATGCTAATCATGTAACTCTTTCCCTGGATGGGCCATTCAAAGTCTGTACACATGAAAAAGAAAAGAAACTCTGTGAGACAGTTAAACTGACACAAAAATCAGTAAACGAGAAGAGTCACTACTACAAAAGTTGTAATTATCGACGGAATTTAGAGATGGAAATTTTTCCGTCTCTAATTGAGACGGAATTAGAGACGGAATATCCAAGGCAGAGACGGAAACCAAAGGGTGCTTCTTCCTCTTCCTCTTCGTACATGACGTTTCATTCTCCAAAAGACACAATGTTTTGCTACTGGACGCTCATCTATAAAATGGGTCATTCTAGAATTATTCTAGAACACACCATTTCACTGAGAGAGGTTGTAGCAATAAAACAATACCATATCAAAAGCATGACGAATGGTAGAACACCAGTGAGAAGGAGTAACAGGAAGAGGGCTCGAAGAACTAAGGCAGATGCTGCTTCTTCCATGGAGTCGTTTGATGGAGAAATCATTTCCACTCTGGTGGTGAAGAAGAAAACTCCATAA 1554 0.3848 MTKAEMNHNDNEQPKNLESNDEGLVHTDEQGGQQSYQQAECLKKINELTDYEIRALEFDSEYHAYEFYSEYAKVIGFVVRKGEVYRDRNDAITMRQLVCNRQGERCEKHLNRTDRVREAKPITRTKCNARIHVHLNYKTRKWRVGLFEPAHNDELTPANMVHLLPAYRGLSFADKAQRFEDLWNNVIVKMDLAIINGLERKEIEKVAALNVIKRSEFAAACNRLNKAAHINPYNLLRNIEAIHKLADQMERQKGDDIRIDDISKVVRDPTVVKTKGAPRKTKKMKKRRKCSYCKRPGHTVRTCPKFSKRDQLETVVEEDSSVETDEESRDGTGSVDIASSKHANHVTLSLDGPFKVCTHEKEKKLCETVKLTQKSVNEKSHYYKSCNYRRNLEMEIFPSLIETELETEYPRQRRKPKGASSSSSSYMTFHSPKDTMFCYWTLIYKMGHSRIILEHTISLREVVAIKQYHIKSMTNGRTPVRRSNRKRARRTKADAASSMESFDGEIISTLVVKKKTP 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi145g00028 517 Gene3D - 266 314 - -
Sebi145g00028 517 Pfam FAR1 DNA-binding domain 66 156 IPR004330 -
Sebi145g00028 517 MobiDBLite consensus disorder prediction 475 495 - -
Sebi145g00028 517 SUPERFAMILY Retrovirus zinc finger-like domains 277 309 IPR036875 GO:0003676|GO:0008270
Sebi145g00028 517 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 9 341 - -
Sebi145g00028 517 MobiDBLite consensus disorder prediction 315 337 - -
Sebi145g00028 517 MobiDBLite consensus disorder prediction 1 25 - -
Sebi145g00028 517 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi145g00028 Sebi-Chr145 1048327 1052780 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi145g00028 FAR1 1.2e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi145g00028 - - ccaj:109792835 155.606