Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi144g00077 ATGGCCACCACAGAAGAGCCAACTGTCGCGGTTGAACCCGCACCCGAACCTACCATCACCGAGCCACAACCCGAGGAGAAGGAGGAAGCCAAGCCTGAAGAGGCCAAAACCAGGAAAACCAAGGACCCCAAACCTAAGAAGGTTTCCAAACCACGGAACCCTTCTACTCATCCTTCTTATGAAGAGATGATTAAGGATGCAATTGTGACGCTGAAGGAGAAATCGGGTTCGAGCCAATACGCGATTCAAAAATTCACCGAAGAGAAGCACAAGCAGCTTCCTCCAAACTTCAGGAAGCTCTTGCTCTACCATTTGAAGAAGCAAGTTGCTTCTGGAAAGCTCGTCAAGCCCAAGCCTGCTGTTGCCAAGCCCAAAGCTGCTGCCAAGCCGAAAACAGCTGTAAAACCTAAGCCCAAACCGGCGAAGGCTGCAAGGACCTCGACGAGGACAACACCAGGGAAGAAAGTTGCCACTTCGAAGCCTGCACCGAAGAAAGCTCCGGCTGCAAAGAAAACTCCGGTAAAGAGCGTGAAGCCGAAGAGTGTAAAATCTCCGGCGAAGAAGGCTACACCAAAGAGAGGGGGAAGGAAGTGA 594 0.5168 MATTEEPTVAVEPAPEPTITEPQPEEKEEAKPEEAKTRKTKDPKPKKVSKPRNPSTHPSYEEMIKDAIVTLKEKSGSSQYAIQKFTEEKHKQLPPNFRKLLLYHLKKQVASGKLVKPKPAVAKPKAAAKPKTAVKPKPKPAKAARTSTRTTPGKKVATSKPAPKKAPAAKKTPVKSVKPKSVKSPAKKATPKRGGRK 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi144g00077 197 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 56 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sebi144g00077 197 MobiDBLite consensus disorder prediction 110 197 - -
Sebi144g00077 197 CDD H15 54 114 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sebi144g00077 197 SUPERFAMILY "Winged helix" DNA-binding domain 53 135 IPR036390 -
Sebi144g00077 197 Gene3D - 52 147 IPR036388 -
Sebi144g00077 197 MobiDBLite consensus disorder prediction 21 41 - -
Sebi144g00077 197 MobiDBLite consensus disorder prediction 1 64 - -
Sebi144g00077 197 Pfam linker histone H1 and H5 family 57 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sebi144g00077 197 PANTHER HISTONE H1 28 191 - -
Sebi144g00077 197 SMART h15plus2 54 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sebi144g00077 197 MobiDBLite consensus disorder prediction 181 197 - -
Sebi144g00077 197 PRINTS Histone H5 signature 70 87 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Sebi144g00077 197 PRINTS Histone H5 signature 180 197 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Sebi144g00077 197 PRINTS Histone H5 signature 43 64 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Sebi144g00077 197 PRINTS Histone H5 signature 148 162 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi144g00077 Sebi-Chr144 1188348 1189271 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi144g00077 53 114 Single Myb Histone (SMH) Gene Family AT1G72740 35.484 3.16e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi144g00077 K11275 - gmx:100795994 135.191