Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi144g00034 ATGCTGCAGGAGCCTTCAGAAATTTTGTTTGAAACATTTCCAAGCAATCATGACCCTTTTCATGATTCTCTTTCCTTCGACATGGTGAACAAGTCTGAAGCTAAAACATTAGTGCAGATGCAGATGCAGAGTAATGATCATAATAGTAATAAGGAAAGGTCATGTATAGGAGTGAGGAAAAGGCCTTGGGGAAAATTTGCAGCAGAGATCAAAGACACAACAAGGAATGGCGCCAGGGTATGGCTTGGAACCTTTGACAATGCAGAGGCTGCTGCTTTAGCTTATGACCAAGCTGCTTTCTCCATGAGAGGCCATAATGCTGTTCTCAATTTTCCAGTCAAAAGGGTCAAAGAATCTCTGCAACAGATCCAATATGATTGTAGTACCAACAGTTGTTCACCTGCACTTGCACTCAAGGAGAGGCACTGCATCCAAAGAAAATTGTCTTCATCAAAAGCTAAAAAGGGTAAAGGGAAATTACAGGTATCAGAGGCACCAAGACCAAATGTGTTGGTGTTAGAGGACTTGGGAGTTGAATATTTAGAGCAGCTTCTAACCATATCCGATCAAACTGCAACCACTAGTTCTAGCTACTTCAAGTAA 603 0.4163 MLQEPSEILFETFPSNHDPFHDSLSFDMVNKSEAKTLVQMQMQSNDHNSNKERSCIGVRKRPWGKFAAEIKDTTRNGARVWLGTFDNAEAAALAYDQAAFSMRGHNAVLNFPVKRVKESLQQIQYDCSTNSCSPALALKERHCIQRKLSSSKAKKGKGKLQVSEAPRPNVLVLEDLGVEYLEQLLTISDQTATTSSSYFK 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi144g00034 200 PANTHER DNA-BINDING DOMAIN 36 190 IPR044808 GO:0003700|GO:0009873
Sebi144g00034 200 SUPERFAMILY DNA-binding domain 55 113 IPR016177 GO:0003677
Sebi144g00034 200 ProSiteProfiles AP2/ERF domain profile. 54 112 IPR001471 GO:0003700|GO:0006355
Sebi144g00034 200 Pfam AP2 domain 56 105 IPR001471 GO:0003700|GO:0006355
Sebi144g00034 200 CDD AP2 57 113 IPR001471 GO:0003700|GO:0006355
Sebi144g00034 200 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Sebi144g00034 200 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Sebi144g00034 200 FunFam Ethylene-responsive transcription factor 2 55 114 - -
Sebi144g00034 200 SMART rav1_2 57 118 IPR001471 GO:0003700|GO:0006355
Sebi144g00034 200 Gene3D AP2/ERF domain 56 114 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi144g00034 Sebi-Chr144 554072 554674 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi144g00034 13 193 AP2-EREBP Transcription Factor Family AT3G23240 44.865 1.21e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi144g00034 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi144g00034 K14516 - gmx:100527364 243.817