Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi144g00022 ATGCCGTCGCTACTGTCGCCGGGGAAAATCCACCGGCTGGAGATGGAGAATTTCAAGTCGTACAAGGGTTTCCAAGTTATTGGTCCCTTCTACGACTTCACAGCCATCATTGGCCCCAACGGTGCCGGAAAATCGAACCTCATGGACGCTATCAGCTTCGTGCTCGGCGTGAGGACCGGCCAGCTTCGTGGCGCGCAACTCAAGGACCTTATCTACGCCTTCGACGACAGGGAGAAGGAGCAGAAGGGGCGCAGGGCCTTCGTTCGCTTGGTTTACCAGCTCGCCAACAACTCCGAGATCCAATTCACCAGAACCATCACCGCCGCCGGCGCCAGCGAGTACCGCATCGACGGCAACGTTGTCACATGGGACGTCTACAATGCCAGGCTCAAGTCCCTCGGCATTCTTGTTAAGGCTCGCAATTTCTTAGTCTTTCAGGGTGATGTGGAATCCATTGCGTCTAAAAATCCCAAAGAGCTCACTGGCCTTATTGAGCAGATATCTGGCTCTGACGAGCTTAAGAGGGACTATGAGCAGTTTGAAGAAGAAAAAGGTGCTGCTGAGGAAAAATCAGCACTTGTTTATCAGAAGAAAAAGACGGTGGTTATGGAGAGAAAACAGAAGAAAGAACAGAAGGAAGAGGCAGAGAAACATCTCCGCTTGCAAGATCAATTGAAATCATTGAAGAAAGAACATTTCTTGTGGCAGTTGTTCAATATAGAAAACGATATTGTTAAAACAACTGAGGATCTTGAAGATGAGAAAAAAAGTCGTGAAGGTGTTATTGAAGAACTAGAAAAATTTGAAAATGAAGCCAGTAAAAAGAAAAAAGAGCAGGCCAAATATCTGAAAGAGGTTGCACTACGTGAAAAGAAAATTACTGAGAAAAGCAACAGACTTGACAAGAGTCAACCTGAGCTTCTGAAGTTAAAGGAGGAAATGACTCGTATCAATTCAAAAATTAAAAAAGGGAAGAAGGAGCTTGATAAGAAAAGGGAAGAACGGAGGAGGCATGCTGCTGATATTGCGGAGCTACAAAGGGGCATCCAGGATCTTACAGCAAAAATGGCAGACTTACAGGAAAAGGGTCGAGATGCTGGCGATCAGCTTAAGTTAGATGGCAGTGACTTGGAAGAATATTTTAGAATAAATGTGCAGATGGTGTTGCCTGCATATATAGTATTTCATTCAGTGGCCAGTTGCTTGTCATTAGCAGTTGGCCTTGCATTTTCAATTGGAACCTCTCCACAAGCAACGGAAATACTTTTACAAAAATTTGCACTGAATTCCATCACTGCTGTATTCTGGCAGCCCAGTTCGTTCTACCTAAGGAACAAAGAGGAAGCTGGGATGAAAACTGCAAAGCTTAGAGAGGAAAAAGAACTTCTAGACAGGCAGCAACATGCTGATAGTGAAGCTCAAAAGAATTTGGAAGAAAATCTTCAACAGTTAAGAAACAGGGAGTCTGAACTGAATTCACAGGAAGAACAGATGCGGGCAAGACTTAAAAAAATTCTTGATAATTCTGCAAAAAATAAGGATAGCCTTGTAAACTTGAAGAAAGAACTGCGTGTGATGCAGGACAAACATCGTGACTCCAAGAAAAAATATGAAAATTTGAAGTTAAAAATTGGTGAATTAGAAAATCAACTACGTGAATTGAAGGCTGATAGATATGAAAATGAGAGAGATGCTAAACTGTCTCAGGCTGTGGAGACTCTGAAACGCCTGTTTCAAGGAGTCCATGGTCGCATGACTGAACTTTGCAGGCCAACACAGAAGAAGTATAACCTAGCTGTTACTGTTGCTATGGGTAAATTTATGGATGCAGTTGTAGTTGAGGATGAAAAGACTGGGAAGGAATGCATCAAGTATTTAAAAGATCAGAGGCTTCCTCCCCAGACATTTATTCCTCTGCAATCTATTCGTGTGAAGCCAATAATGGAGAGACTGCGCACATTAGGGGGTACAGCAAAACTGTGCAAGTTTGATCCCTCCTTGGAGAAGGCAATTCTATTTGCTGTTGGGAATACTCTTGTCTGTGAAGATCTTGAGGAGGCCAAAATTTTAAGCTGGAGTGGTGAGAGGTTTAAAGTTGTAACTGTGGATGGAATTCTGCTGGCAAAATCTGGCACAATGACTGGTGGTACTAGTGGTGGAATGGAAGCAAGGTCAAAACAGTGGGATGACAAGAAAATTGAAGGACTGAATAAAAAGAAAGAGCAGTATGAATCGGAGTTAGAAGAGCTAGGATCAATAAGAGATATGCACCTTAAAGAGTCTGAAGCATCTGGAAAAATTAGTGGACTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAGCGAAGCATTGAAGACAAACTTTCAAATTTGAGCCAAGAAAAAGAGACCATTAAAGAAGAAATTGATCGTATCAGTCCAGATCTCCAGAAGTTAAATGATACTATTGACAAGAGGAATGCAGAATTACGTAAGCTTGAGAAGAGGATAAATGAAATCACTGATCGGATATACAAAAACTTCAGCAAGTCAGTTGGGGTTGCAAACATCCGAGAGTATGAAGAAAATCAACTCAAGGCTGCTCAAAATGTAGCAGAGGAGAGGCTGAATCTGAGTAGCCAACTTTCAAAATTAAAATATCAGTTGGAGTATGAGCAAAATCGAGACATGAGTTCACGAATTCAAGAATTGGAATCTTCTCTAAGTTCTTTAGAGAATGATTTAAAACGGGTGCAGAACAAAGAGGCTGAAGCAAAGGTGGCAGCTGAAAAGGCTACTGAAGAGATTAATCAGTTTAAGGAAGAAGCTAAAGAGTGGAAATCAAAGTCAGAGGATTGTGAAAAGGAAATCCAAGAATGGAAGAAGAAAGCTTCTGCAGCCACAACAAACATATCCAAACTTAATCGTCTGATAAACTCTAAGGAGGCACAGATTGAGCAGTTGATGCTGCAAAAACAGGAAATATTAGAGAAGTGTGAACTAGAACAGCTTAGCCTTCCAACCATATCAGATCCTATGGATACTGATAGCTCAACACCAGGTCCAGTTTTTGACTTTGATCAGCTCAGTAGGACACTGAGAGATAGGAGACCCTCTGACAGGGATAAAATTGAGGGGGACTTTAAGCAAAAAATGGACGCCTTAATATCTGAAATAGAAAGAACTGCACCGAATTTGAAGGCACTGGACCAATATGAGGCTCTGCTAGAAAAAGAAAGAGTTGTAACTGAAGAGTTTGAAGCTGTCAGGAAAGAGGAGAAGGAAAAAGCAGATAGATTCAATGCAGTTAAGCATCGGAGGTATGAGTTGTTCATGGATGCTTTCAACCACATATCTAGTAATATAGATAAAATTTACAAACAACTTACAAAGAGTAACACGCATCCTCTGGGTGGAACTGCATACCTGAATTTGGAAAATGAAGATGATCCATTTCTACATGGCATCAAGTACACTGCTATGCCCCCAACAAAGCGCTTCCGTGATATGGAGCAGCTCTCTGGTGGGGAAAAGACTGTTGCTGCACTTGCGTTGCTATTCTCAATCCACAGTTATAAGCCTTCACCGTTTTTTATATTGGATGAAGTTGATGCTGCATTGGACAACTTGAATGTCGCAAAGGTTGCTGGCTTCATTCGTACAAGATCTTGTGAAGGAGCGAGGGCCAGTCAGGATGCTGATGGTGGAAGTGGTTTTCAGAGTATCGTGATATCACTGAAAGACAGCTTTTATGACAAAGCTGAAGCGTTAGTTGGGGTTTACAGGGACTCTGAAAGAGGCTGTTCGAGAACTCTCACATTTGATCTGACTAAATATCGGGAGTCTTAA 3828 0.419 MPSLLSPGKIHRLEMENFKSYKGFQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDREKEQKGRRAFVRLVYQLANNSEIQFTRTITAAGASEYRIDGNVVTWDVYNARLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGSDELKRDYEQFEEEKGAAEEKSALVYQKKKTVVMERKQKKEQKEEAEKHLRLQDQLKSLKKEHFLWQLFNIENDIVKTTEDLEDEKKSREGVIEELEKFENEASKKKKEQAKYLKEVALREKKITEKSNRLDKSQPELLKLKEEMTRINSKIKKGKKELDKKREERRRHAADIAELQRGIQDLTAKMADLQEKGRDAGDQLKLDGSDLEEYFRINVQMVLPAYIVFHSVASCLSLAVGLAFSIGTSPQATEILLQKFALNSITAVFWQPSSFYLRNKEEAGMKTAKLREEKELLDRQQHADSEAQKNLEENLQQLRNRESELNSQEEQMRARLKKILDNSAKNKDSLVNLKKELRVMQDKHRDSKKKYENLKLKIGELENQLRELKADRYENERDAKLSQAVETLKRLFQGVHGRMTELCRPTQKKYNLAVTVAMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSIRVKPIMERLRTLGGTAKLCKFDPSLEKAILFAVGNTLVCEDLEEAKILSWSGERFKVVTVDGILLAKSGTMTGGTSGGMEARSKQWDDKKIEGLNKKKEQYESELEELGSIRDMHLKESEASGKISGLEKKIQYAEIEKRSIEDKLSNLSQEKETIKEEIDRISPDLQKLNDTIDKRNAELRKLEKRINEITDRIYKNFSKSVGVANIREYEENQLKAAQNVAEERLNLSSQLSKLKYQLEYEQNRDMSSRIQELESSLSSLENDLKRVQNKEAEAKVAAEKATEEINQFKEEAKEWKSKSEDCEKEIQEWKKKASAATTNISKLNRLINSKEAQIEQLMLQKQEILEKCELEQLSLPTISDPMDTDSSTPGPVFDFDQLSRTLRDRRPSDRDKIEGDFKQKMDALISEIERTAPNLKALDQYEALLEKERVVTEEFEAVRKEEKEKADRFNAVKHRRYELFMDAFNHISSNIDKIYKQLTKSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRTRSCEGARASQDADGGSGFQSIVISLKDSFYDKAEALVGVYRDSERGCSRTLTFDLTKYRES 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi144g00022 1275 FunFam Structural maintenance of chromosomes 1A 9 224 - -
Sebi144g00022 1275 Coils Coil 170 190 - -
Sebi144g00022 1275 Pfam RecF/RecN/SMC N terminal domain 10 1256 IPR003395 -
Sebi144g00022 1275 SMART SMC_hinge_2 579 691 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Sebi144g00022 1275 Gene3D - 1097 1275 IPR027417 -
Sebi144g00022 1275 Coils Coil 307 369 - -
Sebi144g00022 1275 Coils Coil 767 801 - -
Sebi144g00022 1275 Gene3D - 557 639 - -
Sebi144g00022 1275 SUPERFAMILY Smc hinge domain 543 740 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Sebi144g00022 1275 Coils Coil 251 285 - -
Sebi144g00022 1275 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 10 1275 - -
Sebi144g00022 1275 SUPERFAMILY Tropomyosin 755 980 - -
Sebi144g00022 1275 Coils Coil 198 231 - -
Sebi144g00022 1275 Coils Coil 467 501 - -
Sebi144g00022 1275 Coils Coil 733 753 - -
Sebi144g00022 1275 Coils Coil 516 564 - -
Sebi144g00022 1275 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Sebi144g00022 1275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 950 1258 IPR027417 -
Sebi144g00022 1275 Gene3D - 8 230 IPR027417 -
Sebi144g00022 1275 PIRSF SMC 8 381 IPR024704 GO:0005524|GO:0016887
Sebi144g00022 1275 PIRSF SMC 430 1272 IPR024704 GO:0005524|GO:0016887
Sebi144g00022 1275 Pfam SMC proteins Flexible Hinge Domain 579 690 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Sebi144g00022 1275 Coils Coil 887 991 - -
Sebi144g00022 1275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 272 IPR027417 -
Sebi144g00022 1275 Coils Coil 850 870 - -
Sebi144g00022 1275 Gene3D - 640 718 - -
Sebi144g00022 1275 Coils Coil 809 836 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi144g00022 Sebi-Chr144 317932 331057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi144g00022 8 114 Structural Maintenance of Chromosomes family AT5G61460 33.333 7.43e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi144g00022 K06636 - gmx:100791953 1944.86