Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi144g00017 ATGGTTGGGGTGTTAAAGCGTTTGAAGCCAGTTCTTGATGATGTTATGGATTACAAAATTCCTTTAGATGAAAATCTATGTAAAGAGTGTGAAGAATTGGATATACGGATTAATGAAGCTAGAGATTTCATTGAAAAATGGGGTCCAAAGATGAGCAAGATTCACAGTGTTCTACAAAGTGGGACATTGTTGATCAAGTTACAGAGCACTTCACTTGATATATGTCACATGATTGTTAGATCCTTACAGTCACCTCCATGTGCATCAGTTTTAGCTAATCTTCAGCACTATATCCAGGAACTTCAGTGTCTCAAGAAGGAAAAGGCAATGGTCTATATAGAAGAAGCACTGAGAAACCAAAGAGATAATATTGAACCGTGCAATGACCATCTAAAGGAGATTATTGAGTTGCTTAAATTGACTTCCAACCAGGAGCTCTTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAATGCTGAAGTCAATAAGATGAAAGGGGACTTGGAAGAAATTAATGAAATTGTGAATCTTGTCCGCAATTTACGTGATTATGTGATGAAAACTGAGTACCCTGTAGTCAAGAGTGGTGTCTCAGTCCCTCCATACTTCCGCTGTCCTTTATCATTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCTGGTCAAACTTATGAGAGGCAATCCATCCAAAAGTGGCTTGATCATGGGCTGACTGTTTGTCCCAAGACACGTCAGAGACTTACTCATACAAATCTCACTCCCAATTATACTGTCAAAGCTATGATAGCAAATTGGCGTGAGGAAAATAATATCCAACTTTCCAGTAACTCTGAAAACAATAATTCTTCCCGTATCACATCCCCTTCATATTGTTCATTGCCTCAAGATTTTGCTCATGCATGTGGTTTTGGGTCTTTACCTTGTAGCAATTCCACTTCAAGATCATCTCTTCAAACTGGAAATGCATTTGAGAAACAAAAGGGTGATAACTCTTTCAGATTACATGGAGAATGCAATGGATTCCAGAGTGGAGCAACAGAAAAGTGTGAGCAACAGTCCCCATTTATTCACAGCAGAAGTGATTCATTCTCAAGTTCAATTTCTAGTACTGATTGCGTGCTTGCAGTTTCCAAAGAGGTGTCAGGGATATCCAATAAGCACCAAAATGTGAAGGTGTTGTCTGGAGAAATCAGAAACGTGTGTCCTGCTTCTCCTGGTAATAAACAATCAAGGATATCTCCTTCAATATCTGGAAAACAATTTGAAAGCCCTGGATCAAATTTGGGAGGGCTGGAGAATGGAAATACTAATGATGGTAATACCAATAATAGCCATCCTGTTCTCAACTCAGGATCGGATGAATTAACCACTTCATCACATGTCAATAAATTGATTGACAACCTTCACAGTCAATCAATTGAAGTGCAGACTACAGCTGCAGAAGAATTGAGGCTCCTCACAAAGCATAACATGGAAAACCGTGTCATTGTAGGGCAGTGTGGGGCTGTCATGCCTTTACTTTCACTGTTATATTCAGATGTGAAGATAACACAAGAGCATGCTGTGACAGCTCTGCTGAATTTGTCACTTAATGAAGACAACAAGGCCTTGATTATGGAAGCAGGAGCCATAGAACCACTTATCCATGTTCTGAAAACAGGAAATGATGGGGCCAAGGAGAATTCTGCTGCAGCTCTATTCAGCCTCTCCGTAATAGAGAACAATAAGGAAAAAATTGGCCGTTCTGGTGCAGTTAGAGCTTTGGTGGATCTTCTTGCCTCAGGAACACTTAGAGGTAAGAAGGATGCTGCTACTGCTTTATTCAACCTTTCAATATTTCATGAGAATAAAGCTCGTATAGTTCAAGCCGGAGCTGTGAAATTTCTGGTTCGGTTAATGGACCCTGCTGATGGAATGGTTGATAAAGCTGTTGCTCTTCTGTCAAACCTGTCAACAATTACAGAGGGCCGATTAGAAATTGCAAGGGAAGGTGGCATCCCATTACTAGTTGAACTTGTTGAATCGGGTTCTCAGAGGGGAAAGGAAAATGCTGCCTCCATTCTCTTGCAATTATGCCTTCATAGTTCCAAGTTTTGTATTCTGGTTTTGCAAGAAGGAGCTGTACCTCCCTTAGTTGCATTGTCTCAATCTGGTACACCAAGAGCAAAGGAGAAGGTTTGGAGCTTCTCATTCTTTGCCTTTTCCATCCTTATCAGTGGTTAA 2226 0.4043 MVGVLKRLKPVLDDVMDYKIPLDENLCKECEELDIRINEARDFIEKWGPKMSKIHSVLQSGTLLIKLQSTSLDICHMIVRSLQSPPCASVLANLQHYIQELQCLKKEKAMVYIEEALRNQRDNIEPCNDHLKEIIELLKLTSNQELLKESIAVEKERLNAEVNKMKGDLEEINEIVNLVRNLRDYVMKTEYPVVKSGVSVPPYFRCPLSLELMLDPVIVASGQTYERQSIQKWLDHGLTVCPKTRQRLTHTNLTPNYTVKAMIANWREENNIQLSSNSENNNSSRITSPSYCSLPQDFAHACGFGSLPCSNSTSRSSLQTGNAFEKQKGDNSFRLHGECNGFQSGATEKCEQQSPFIHSRSDSFSSSISSTDCVLAVSKEVSGISNKHQNVKVLSGEIRNVCPASPGNKQSRISPSISGKQFESPGSNLGGLENGNTNDGNTNNSHPVLNSGSDELTTSSHVNKLIDNLHSQSIEVQTTAAEELRLLTKHNMENRVIVGQCGAVMPLLSLLYSDVKITQEHAVTALLNLSLNEDNKALIMEAGAIEPLIHVLKTGNDGAKENSAAALFSLSVIENNKEKIGRSGAVRALVDLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVRLMDPADGMVDKAVALLSNLSTITEGRLEIAREGGIPLLVELVESGSQRGKENAASILLQLCLHSSKFCILVLQEGAVPPLVALSQSGTPRAKEKVWSFSFFAFSILISG 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi144g00017 741 ProSiteProfiles U-box domain profile. 199 273 IPR003613 GO:0004842|GO:0016567
Sebi144g00017 741 MobiDBLite consensus disorder prediction 400 456 - -
Sebi144g00017 741 SMART Ubox_2 203 266 IPR003613 GO:0004842|GO:0016567
Sebi144g00017 741 Coils Coil 148 175 - -
Sebi144g00017 741 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 285 IPR013083 -
Sebi144g00017 741 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 625 666 IPR000225 GO:0005515
Sebi144g00017 741 SMART arm_5 654 694 IPR000225 GO:0005515
Sebi144g00017 741 SMART arm_5 491 531 IPR000225 GO:0005515
Sebi144g00017 741 SMART arm_5 614 653 IPR000225 GO:0005515
Sebi144g00017 741 SMART arm_5 532 572 IPR000225 GO:0005515
Sebi144g00017 741 SMART arm_5 573 613 IPR000225 GO:0005515
Sebi144g00017 741 SMART arm_5 696 740 IPR000225 GO:0005515
Sebi144g00017 741 FunFam RING-type E3 ubiquitin transferase 197 273 - -
Sebi144g00017 741 Pfam Armadillo/beta-catenin-like repeat 532 571 IPR000225 GO:0005515
Sebi144g00017 741 Pfam Armadillo/beta-catenin-like repeat 576 612 IPR000225 GO:0005515
Sebi144g00017 741 Pfam Armadillo/beta-catenin-like repeat 493 530 IPR000225 GO:0005515
Sebi144g00017 741 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 584 626 IPR000225 GO:0005515
Sebi144g00017 741 SUPERFAMILY ARM repeat 456 728 IPR016024 -
Sebi144g00017 741 Pfam U-box domain 200 271 IPR003613 GO:0004842|GO:0016567
Sebi144g00017 741 Coils Coil 87 107 - -
Sebi144g00017 741 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 502 544 IPR000225 GO:0005515
Sebi144g00017 741 CDD RING-Ubox_PUB 201 253 IPR045210 -
Sebi144g00017 741 Gene3D - 448 731 IPR011989 -
Sebi144g00017 741 FunFam RING-type E3 ubiquitin transferase 445 734 - -
Sebi144g00017 741 PANTHER U BOX DOMAIN-CONTAINING 6 726 - -
Sebi144g00017 741 SUPERFAMILY RING/U-box 198 273 - -
Sebi144g00017 741 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 585 IPR000225 GO:0005515
Sebi144g00017 741 MobiDBLite consensus disorder prediction 404 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi144g00017 Sebi-Chr144 268144 270774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi144g00017 13 726 U-box Gene Family AT3G54790 53.719 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi144g00017 - - gmx:100800949 1130.16