Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi144g00002 ATGGATCATGTGATTGGTGGGAAGTTTAAACTGGGAAGAAAAATTGGAAGTGGGTCTTTTGGGGAGCTCTATCTAGGTGTTAATGTACAAACTGGAGAGGAGGTGGCTGTTAAGCTGGAACCTGTGAAGACCAGGCATCCACAGCTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACTGGGGTTCCCCACCTCAAGTGGTTTGGAGTTGAGGGAGACTACAATGTCATGGTTATTGACCTTCTTGGACCAAGCCTGGAAGATTTATTTAATTACTGTAACCGGAAGTTCACATTGAAGACAGTTTTAATGCTTGCTGATCAATTAATTAGCAGAGTTGAATATATGCATTCAAGAGGTTTCCTGCACCGTGACATAAAGCCAGACAATTTTCTAATGGGCCTAGGACGTAAAGCAAATCAAGTGTACATTATTGATTATGGCCTTGCAAAAAAATACAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCACGCTATGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCCGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTACTTCTTAAGAGGAAGTCTTCCCTGGCAAGGACTGAAAGCTGGCACCAAAAAACAAAAATATGATAAAATCAGTGAGACGAAGGTGTCAACTCCCATAGAGGTGCTCTGCAAATCATACCCCTCTGAGTTTGTATCTTACTTCCACTATTGCCGATCATTGAGGTTTGAGGATAAGCCAGATTATTCATATTTAAAGAGACTTTTCCGAGACCTATTTATTCGAGAAGGCTATCAATTTGACTATGTTTTCGACTGGACTATATTGAAGTATCCACAGATTAGTGGCAGCTCTAGAGGGCGGCATGGCACTGGCAAGGCAGCTATGAATGCGGGTCCAACTGTACAAAAACCAGAAAAGATCTCAGCTGGGAAAGACATTCGAGAGAAATACTCTGGTGCTGTTGAAGCATTCTCCCGGAGGAACCATGGAAGCTCTAGTCCTCATCATGGCGATCACACCAAACATAGGACTTTTGAGGATGTACCTGTGCACAAGGATTTGCACTATGCCCAACACAGCTCCACTAGATATGGAAGCAGCTCAAGAAAAGCCATAATCTCATCAAACAAGCCAATTTCTTCAGGTGACCACACTGGCAGGCTAACCTCAAGTGGGGCCCCGTCCATCTGCTACACACAGAATTCAACCTGTGTATGA 1272 0.4332 MDHVIGGKFKLGRKIGSGSFGELYLGVNVQTGEEVAVKLEPVKTRHPQLHYESKLYMLLQGGTGVPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKFTLKTVLMLADQLISRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISETKVSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQISGSSRGRHGTGKAAMNAGPTVQKPEKISAGKDIREKYSGAVEAFSRRNHGSSSPHHGDHTKHRTFEDVPVHKDLHYAQHSSTRYGSSSRKAIISSNKPISSGDHTGRLTSSGAPSICYTQNSTCV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi144g00002 423 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Sebi144g00002 423 CDD STKc_CK1_delta_epsilon 8 282 - -
Sebi144g00002 423 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi144g00002 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Sebi144g00002 423 FunFam Casein kinase 1-like protein 1 330 - -
Sebi144g00002 423 MobiDBLite consensus disorder prediction 377 411 - -
Sebi144g00002 423 PANTHER CASEIN KINASE-RELATED 9 347 - -
Sebi144g00002 423 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi144g00002 423 FunFam Putative Casein kinase I 1 85 - -
Sebi144g00002 423 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Sebi144g00002 423 MobiDBLite consensus disorder prediction 376 411 - -
Sebi144g00002 423 Gene3D Transferase(Phosphotransferase) domain 1 1 336 - -
Sebi144g00002 423 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi144g00002 423 MobiDBLite consensus disorder prediction 300 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi144g00002 Sebi-Chr144 32214 38169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi144g00002 8 213 MAP Kinase Kinase Kinase AT3G06030 25.926 5.44e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Sebi144g00002 Pkinase 5.6e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi144g00002 K08960 - gmx:100789031 779.245