Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi143g00057 ATGGCGTTTGAGCACTACTTTTCCCAGGAATGGAAAGCCATCCCAAATGCTGTGACAGAGACAGAAAATTTTGATGGTTGTTTTGATTGCAATATCTGCCTAGACTTTGCACATGAACCAGTAGTTACCCTCTGTGGCCACCTTTACTGCTGGCCTTGCATCTATAAATGGCTCTATGTTCAAAGTGCTTCTCTTGCACCTGATGAACACCCACAATGCCCTGTTTGTAAGGATGATATATCCCATACCACAATGGTTCCTCTCTATGGCAGGGGCCAGACCCCAGCTGTTAGTGACCCTGATGGGAAGGCACCCGGTAGAGATAGGTTTATACCACCAAGACCATCTGCTTCAGGTGCTCAATCTCTGTTGGCAACATCTTCATCACAAAGTGGTCAGCAACTTCCATATCGTAATCCTTATCAGAATCAACATTTCAACTCCCCTCCATACCAAGAAGAGGATGATGAGACATCACAAATGCTCAATCCTGGATCCAACATGACACCAGGATTCCCCCACCTTGTGGTTGGGATGTTTGGGGAGATGTTTTGTACCCGAGTCTTTGGCAACTCAGAAATTTGTACACCTACCCAAATTCTTATCCCCTGA 612 0.4575 MAFEHYFSQEWKAIPNAVTETENFDGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLYVQSASLAPDEHPQCPVCKDDISHTTMVPLYGRGQTPAVSDPDGKAPGRDRFIPPRPSASGAQSLLATSSSQSGQQLPYRNPYQNQHFNSPPYQEEDDETSQMLNPGSNMTPGFPHLVVGMFGEMFCTRVFGNSEICTPTQILIP 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi143g00057 203 SUPERFAMILY RING/U-box 23 89 - -
Sebi143g00057 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 97 IPR013083 -
Sebi143g00057 203 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Sebi143g00057 203 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Sebi143g00057 203 MobiDBLite consensus disorder prediction 88 167 - -
Sebi143g00057 203 SMART ring_2 30 76 IPR001841 -
Sebi143g00057 203 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Sebi143g00057 203 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 131 - -
Sebi143g00057 203 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 192 IPR045103 GO:0005783|GO:0006511|GO:0061630
Sebi143g00057 203 MobiDBLite consensus disorder prediction 119 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi143g00057 Sebi-Chr143 1642345 1642956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi143g00057 12 190 C3H Transcription Factor Family AT4G27470 42.246 5.90e-42 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi143g00057 K10666 - gmx:100779793 314.309