Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi142g00048 ATGGATTGTTGTGTCTGCACAACTATGCCATTGATATTAAGGCCTCCAAGGAATACAATATGTGGGGCTTGTTATGAAGGAGTTAGAAGCATAATCAACATGATGAATAGTATGGAAAGTGAGAAAGCAAAAACACTTGATGATTGTATAAGATGGTGTTCAGAGCAGATAGAACAGTTCAATCAACAGAAAGAAGACTTAGCTTTCCTCAGAGGCTTTGTTGCTGCATTCAAAGCACAGATTCACACTGATATACTGGTCAATCCAGGCAACCTTGGTCCACCTATACCTGCACATAAGTCTGTTTTGGCGGCAAGATCAGAAATTTTCAAGAACATGCTAGAGTGTGATGAATGCAAAGCTCCAGCCAGTAACACCATAACTATACCGGATTTGAACCATGATGAATTAGAGTCTCTTCTGGAGTTTCTCTACAGTGGGACCTTAGCTGTGGAAAAGTTGGAGAAACATGTGTATGCCTTGTCACAAGCAGCTGATAAGTATGTTATCCCACACTTGCTGAAATACTGTGAAAAATACCTGCTGAGTTCACTTAGCACCTCTAATGCACTTGAGACACTAGAGATTGCTGACACTTGTTCCAACCACAACTTGAAGGAGACAACCTTGAATTTCTTAGTTAAGAACATTGAGCATATGGTGTCCTCCCCTAAATTTGAAGCTTTTGTACACAGGAGTCCACATCTAACTGTGCAACTAGTTACAAGGGCATTCGTGAATGGTTCCAAATAA 753 0.405 MDCCVCTTMPLILRPPRNTICGACYEGVRSIINMMNSMESEKAKTLDDCIRWCSEQIEQFNQQKEDLAFLRGFVAAFKAQIHTDILVNPGNLGPPIPAHKSVLAARSEIFKNMLECDECKAPASNTITIPDLNHDELESLLEFLYSGTLAVEKLEKHVYALSQAADKYVIPHLLKYCEKYLLSSLSTSNALETLEIADTCSNHNLKETTLNFLVKNIEHMVSSPKFEAFVHRSPHLTVQLVTRAFVNGSK 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi142g00048 250 Gene3D Potassium Channel Kv1.1; Chain A 51 185 IPR011333 -
Sebi142g00048 250 SMART BTB_4 83 185 IPR000210 GO:0005515
Sebi142g00048 250 Gene3D - 186 249 - -
Sebi142g00048 250 SUPERFAMILY POZ domain 69 183 IPR011333 -
Sebi142g00048 250 Pfam BTB/POZ domain 78 184 IPR000210 GO:0005515
Sebi142g00048 250 ProSiteProfiles BTB domain profile. 83 153 IPR000210 GO:0005515
Sebi142g00048 250 CDD BACK 186 226 - -
Sebi142g00048 250 CDD BTB_POZ_ZBTB_KLHL-like 82 168 - -
Sebi142g00048 250 PANTHER BTB/POZ DOMAIN CONTAINING PROTEIN, EXPRESSED-RELATED 20 249 IPR044784 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi142g00048 Sebi-Chr142 1198983 1200463 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Sebi142g00048 BTB 5.8e-21 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi142g00048 K10523 - gmx:100814664 462.996