Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi142g00026 ATGACAAGCTCTCTCATTAAGGAATTATTTCCTACAAAAGAAGACTGGAGACTTAAGGTAAAGGTAAGCAGATTGTGGGATGTTCCAAGACGTGATTCTAAAGGGGTTGCGGCTGTCAACATGATACTCATTGATGAGGAGGGCAATAAGATTCAAGCAAGCATATTTCAGCCAGAGCTAATATCTAAATTTGAATCTTGCATCAATGAGGGGAATTGTTATAACATTGAAAATTTGAGCATTGGAGAAAATTCTGGAAATTATAAATCAACTAAACATCCATACCGCATCACTTTTGGATTTGAAACAAAGGTTACACCATGTGAAGCTGTCATCCCTGATTATGCATTTGACTTTGCTCCTTTTGATAAAATTCTATCAGAGAAAAATCCTATGGGACATTTAATTGATATCATTGGAACAATAGCTGAAATTAGTCAACTACAACAGTTCAACTTTGAGGGAGAAAGTGGCAAAAGACTAGAGATTAAATTGGCTGATGAAAGAGATAACTTTGTTAGATTCACACTATTTGGAGACTCTGTTGTAGATGTTTTTAATTCTGTATCTGCTGGTAGTGATGACACAAAGATCATGGTTATGCAACTAGCACGAATTAAACCTTTCAAAGGACAAAACTACTTGGCTACATCATGGAATACAACGAAAATATTCATCAATCCAAATATTCCAGAAGTAGAAAAGTTTAAGAATATGTTAGGGGTATCCCTGCCAAATTTGACTCCAACACAATCCAACACTCAGTTATCAAGTGGGTCTTCATCTTACATAGATGAACTTGGAAACCCTGCTCTCAGACGAACATTAATAGAAATTCGAGATGCAAAACAGACGGTACGAGACAAGGATGGTTTCCTATTATGTACCAAATGTCACAAGACTCCATCTAAAGTTATCCCAAGATTCCGGACGCATTTAATGGTGATGGATCAAACTGGAAGTGCTTGCTTTGTCCTCTTTGAGAAACAAGGTGTTGAACTATTCAACAAGACAGCAAATGAACTACGTGAAGAGATGGTCAAGGATGGTAATGACTCTGCATTTCCACCTATTTTGGAAACATTAGTGGGAAGAAAGTTTGTTTTCATGATTGAAATCAATGCACACTTTAACCTGGAGAAGAAGTCAAATAACTACACAATCTTAAAGCTTTCATATGACACTCGTGTAATACAAGAATTTGATACCTCTTCAGCTGTTTCACAGGAATACCAAGGTCCTGCAATCTCATCCACTCAAGAACAAGACAACTTTCAGAGCAGTGTACACAATGAAATTGGACAGGCTTCACTTACAGCAGAAAATGACACGGACATCTGCTCAAAGACTATGATCACACCTCACAAAAGAAAGAAAAAAAGCAACAGCTCAGATTGTGAAATTACTGGAGTCAATCAGGTGCTAAGTCCAAAGCTTTCGACAACAAAGTCATCTGTTCGAGTTAAAATTGAGAAGAAAAAATGA 1485 0.3697 MTSSLIKELFPTKEDWRLKVKVSRLWDVPRRDSKGVAAVNMILIDEEGNKIQASIFQPELISKFESCINEGNCYNIENLSIGENSGNYKSTKHPYRITFGFETKVTPCEAVIPDYAFDFAPFDKILSEKNPMGHLIDIIGTIAEISQLQQFNFEGESGKRLEIKLADERDNFVRFTLFGDSVVDVFNSVSAGSDDTKIMVMQLARIKPFKGQNYLATSWNTTKIFINPNIPEVEKFKNMLGVSLPNLTPTQSNTQLSSGSSSYIDELGNPALRRTLIEIRDAKQTVRDKDGFLLCTKCHKTPSKVIPRFRTHLMVMDQTGSACFVLFEKQGVELFNKTANELREEMVKDGNDSAFPPILETLVGRKFVFMIEINAHFNLEKKSNNYTILKLSYDTRVIQEFDTSSAVSQEYQGPAISSTQEQDNFQSSVHNEIGQASLTAENDTDICSKTMITPHKRKKKSNSSDCEITGVNQVLSPKLSTTKSSVRVKIEKKK 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi142g00026 494 CDD RPA1_DBD_B_like 137 240 - -
Sebi142g00026 494 Gene3D - 111 243 IPR012340 -
Sebi142g00026 494 SUPERFAMILY Nucleic acid-binding proteins 285 391 IPR012340 -
Sebi142g00026 494 Gene3D - 4 110 IPR012340 -
Sebi142g00026 494 Pfam Replication protein A OB domain 132 216 IPR031657 -
Sebi142g00026 494 CDD RPA1_DBD_A_like 17 105 - -
Sebi142g00026 494 Pfam Domain of unknown function DUF223 41 129 IPR003871 -
Sebi142g00026 494 SUPERFAMILY Nucleic acid-binding proteins 117 248 IPR012340 -
Sebi142g00026 494 Gene3D - 278 401 IPR012340 -
Sebi142g00026 494 SUPERFAMILY Nucleic acid-binding proteins 5 111 IPR012340 -
Sebi142g00026 494 PANTHER OS03G0429900 PROTEIN 1 254 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi142g00026 494 Pfam Replication factor-A C terminal domain 283 391 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi142g00026 Sebi-Chr142 596885 599840 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi142g00026 9 382 Core DNA Replication Machinery Family AT5G08020 23.317 4.79e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi142g00026 - - soe:130460986 211.46