Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi142g00024 ATGGAAGAAGCGGTACTAGGAATAATAATATCTCCTACGAGGGAGCTATCGTCCCAAATATATCATGTTGCACAGCCTTTCATTTCAACTTTAGTGAATGTTAAGTCCATGCTCCTCGTTGGTGGGGTAGAAGTAAAAGCAGACATGAAGAAAATAGAGGAAGAAGGAGCAAACATATTGATTGGCACTCCTGGGCGGCTATATGACATAATGAATCGGATGGATGTCTTGGATTTTAAAAACCTTGAGATTTTGATTTTGGATGAGGCTGATAGACTCTTAGACATGGGGTTCCAAAAGCAGATAACATCCATTATATCTCAATTGCCTAAACTTCGTAGAACCGGTTTATTCTCCGGTACTCAAACTGAGGCTGTAGAAGAGCTTTCCAAAGCCGGATTGAGGAACCCCGTGAGGGTTGAAGTTCGAGCAGAAACAAAATCAGCAAGTGATCCTGCAGCATCAAAACAACTAGAATCTTCAAAGACACCTTCAGGTCTTCATATTGAGTACTTGGAATGTGAGGCAGATAAGAAGCGATCGCAGCTAGTAGATATCCTCATTAAGAACCGCTCAAAAAAAATTATGATATATTTCATGACCTGTGCCTATGTTGACTATTGGGGAGTTGTCCTTCCTCGCCTTTCTGTTTTGAAAGGCCTCTCCCTGATCCCCCTTCATGGGAAGATGAAGCAGTCTGTCAGGGAAAAAGCACTAGCTTCATTTACATCCTTTTCAAATGGAATTCTTCTATGTGCGGATGTTGCAGCACGTGGACTTGACATACCGGGTGTAGATTGTATAGTGCAGCTAGGAAGGACTACAAGGATTCTCAAGTGGGGTGAAATGCACAGGATATGGAATTGCAATGTGTTTCTGAAAATAGCTTCATTTTACCAAGACCAATCTTACAGGGATGTAAAAAATATCTGCATTCGCAGATATCTATGGGTACTTGTTTAA 963 0.4133 MEEAVLGIIISPTRELSSQIYHVAQPFISTLVNVKSMLLVGGVEVKADMKKIEEEGANILIGTPGRLYDIMNRMDVLDFKNLEILILDEADRLLDMGFQKQITSIISQLPKLRRTGLFSGTQTEAVEELSKAGLRNPVRVEVRAETKSASDPAASKQLESSKTPSGLHIEYLECEADKKRSQLVDILIKNRSKKIMIYFMTCAYVDYWGVVLPRLSVLKGLSLIPLHGKMKQSVREKALASFTSFSNGILLCADVAARGLDIPGVDCIVQLGRTTRILKWGEMHRIWNCNVFLKIASFYQDQSYRDVKNICIRRYLWVLV 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi142g00024 320 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 140 IPR014001 -
Sebi142g00024 320 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 86 94 IPR000629 -
Sebi142g00024 320 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 182 320 IPR001650 -
Sebi142g00024 320 Gene3D - 165 300 IPR027417 -
Sebi142g00024 320 Pfam DEAD/DEAH box helicase 7 129 IPR011545 GO:0003676|GO:0005524
Sebi142g00024 320 SMART helicmild6 206 278 IPR001650 -
Sebi142g00024 320 Pfam Helicase conserved C-terminal domain 179 273 IPR001650 -
Sebi142g00024 320 Gene3D - 1 150 IPR027417 -
Sebi142g00024 320 SMART ultradead3 1 170 IPR014001 -
Sebi142g00024 320 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 288 IPR027417 -
Sebi142g00024 320 CDD SF2_C_DEAD 170 276 - -
Sebi142g00024 320 PANTHER RNA HELICASE 6 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi142g00024 Sebi-Chr142 562445 571020 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi142g00024 7 315 Eukaryotic Initiation Factors Gene Family AT3G13920 26.774 8.89e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi142g00024 K14809 - gmx:100801482 465.692