Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi142g00019 ATGGGTGAAAAAGACATGGGAAAAAGGGAAATAAAGGAGATTGTGATAAGACAGTTAGGGAACAATAGACTAAAAGGAAGGAAGGTCATCGGGAAGAGTGAGCTCGCAAATTCAGCAAGAGAGAAGGAAAATGGTCAACCGCCACTTTCTGACCCGGTTCTCCAAGCCCTATCGGACTCTGGGTTCGACTTCTGCACACCGGTTCAAGCCGCCACGATTCCTTTGCTATGCAGCTTCAAGGACGTGGCCGTAGACGCCGCCACCGGTTCAGGAAAAACCCTAGCTTTTGTTGTTCCGCTTGTTGAGATTCTTCGCCGCTCCTCTTCTAATCCCAAGCCTCACCAGGTACTAGGAATAATTATATCTCCTACAAGGGAGCTATCGTCCCAAATATATCATGTTGCACAACCTTTCATTTCAACTTTAGTGAATGTTAAGTCCATGCTCCTTGTTGGTGGGGTAGAAGTAAAAGCAGACATGAAGAAAATAGAGGAAGAAGGAGCAAATATATTGATTGGCACTCCTGGGCGGCTATATGACATAATGAATCGGATGGATGTCTTGGATTTTAAAAACCTTGAGATAACATCCATTATATCTCAATTGCCTAAACTTCGTAGAACCGGTTTATTCTCCGCTACTCAAACTGAGGCTGTAGAAGAGCTTTCCAAAGCCGGATTGAGGAACCCCGTGAGGGTTGAAGTTCGAGCAGAAACAAAATCAGCAAATGATCCTGCAGCATCAAAACAACTAGAATCTTCAAAGACGCCTTCAGGTCTTCATATTGAGTACTTGGAATGTGAGGCAGATAAGAAGCCATCGCAGCTAAATACAATTGATATATCCCCTGTTGTTGCACAGTATGATCCTCCTCAAGATCCAAATGTTTTCATACATAGAGTTGGACGAACTGCTCGGTTGGGTAAGCAAGGACATGCAGTTGTCTTCTTATTGCCAAAGGAGGAATCTTATGTAGAATTCTTGCGTATAAGAAGAGTTCCTCTTCAAGAGAGAACATGCTCCGATGATGTTTCTGATGTTGTTCCTCAGGTTTGCTTCAGGCCTTTATTATCTCAATTCCTTGTTTCTTGTATCTTTACAATATTTGTATACTATAGACCCGATGGGAAGATCCCGTTGTTTTGTTGGTTATGGTGGAAAGAACTTGAAATTGGCAAATTGGCCATGGGATATGGCTTACTGCAACTTCCTTTAATGCCAGAGGTAAAACATCACTCACTGTCCACTGAGGGATTTGAACCGGTTGGAGATATCAATTTGGAGGATATTAAGTACAGGGATAAATCACGACAGAAACAGAGGAAGAAGAACCTGCAAGCAAAGAAAGAAGCCAAAGAGAAAGAGCCAAAACCTCAAAAACCAAACAAAACCCCAAATGCACCTACTGTCATGAGGAAGAAAACTGCTCGACAGAGACGTTCTCAGCAGACAATTGAAGATGAGGAAGAATTGATGCAAGAATACCGCTTGTTGAAGAAATTGAAAAAAGGGACCATAGATGAAGATGAATATGCTAAGTTGACAGGAACTGAGGAATTACTTTGA 1566 0.4234 MGEKDMGKREIKEIVIRQLGNNRLKGRKVIGKSELANSAREKENGQPPLSDPVLQALSDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRSSSNPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNVKSMLLVGGVEVKADMKKIEEEGANILIGTPGRLYDIMNRMDVLDFKNLEITSIISQLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAETKSANDPAASKQLESSKTPSGLHIEYLECEADKKPSQLNTIDISPVVAQYDPPQDPNVFIHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRVPLQERTCSDDVSDVVPQVCFRPLLSQFLVSCIFTIFVYYRPDGKIPLFCWLWWKELEIGKLAMGYGLLQLPLMPEVKHHSLSTEGFEPVGDINLEDIKYRDKSRQKQRKKNLQAKKEAKEKEPKPQKPNKTPNAPTVMRKKTARQRRSQQTIEDEEELMQEYRLLKKLKKGTIDEDEYAKLTGTEELL 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi142g00019 521 Coils Coil 435 455 - -
Sebi142g00019 521 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 73 233 IPR014001 -
Sebi142g00019 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 284 338 IPR027417 -
Sebi142g00019 521 CDD DEADc_DDX55 53 233 - -
Sebi142g00019 521 MobiDBLite consensus disorder prediction 433 489 - -
Sebi142g00019 521 Pfam DEAD/DEAH box helicase 66 193 IPR011545 GO:0003676|GO:0005524
Sebi142g00019 521 PANTHER RNA HELICASE 280 447 - -
Sebi142g00019 521 SMART ultradead3 61 263 IPR014001 -
Sebi142g00019 521 Gene3D - 10 236 IPR027417 -
Sebi142g00019 521 Gene3D - 278 354 IPR027417 -
Sebi142g00019 521 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 42 70 IPR014014 GO:0003724
Sebi142g00019 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 235 IPR027417 -
Sebi142g00019 521 MobiDBLite consensus disorder prediction 446 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi142g00019 Sebi-Chr142 445342 451751 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi142g00019 49 317 Eukaryotic Initiation Factors Gene Family AT3G19760 24.277 1.23e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi142g00019 K14809 - gmx:100801482 405.216