Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi142g00012 ATGAGCAACAACTGGAAATTCAGCCGCTTCAGGGACTTTCGTGGTGTTCTGTGCCTTCTAGCGCTGTGTTTGTTGTTTCAGAGCTTTGGTTTGTGCTGCTCTCTTAATGAAGAAGGTAAAGCTCTTTTGAAGTTGAAGCAGGGAATAGTGAGTGACCCTTTTGGTGCTTTGTCAAATTGGGTTGATGATGAAGTGGTGATTGACCCGTGTAATTGGTTTGGAGTTGAGTGCTCAGATGGAAGAGTGGTTGTCTTGAATTTGAAAGACCTTTGTCTTGAAGGCAATTTGGCACCTGAGCTCGCTAACCTTGTTCATATGAAGTCCATAATTTTGCGGAACAATTCTTTTTATGGGATCATCCCTGAAGGAATTGTACACTTGAATGAATTAGAGGTTTTGGATTTGGGCTACAACAACTTCAGTGGACCTCTACCTACAGATCTTGGGAGTAATATGTCGCTGACTATCCTTTTGCTTGACAATAATGATCTTCTTTGTGGTTTCTCTCCTGAAATTAATGAATTGAAGATGCTTTCTGAATCTCAAGTAGATGAAAACCAGCTGATTGGTGCAGAAAAAATGCCTCATTGTATGGGCAGATCCATCACACGGCATGTTGGACAAAATAAGAAAGGTCTTCGGATCCTACTGCAAACTCATAACCGTACTCATGAAGATCCTTATAATCGTGAAGCTAATCTTACAAATATTCCTGCTCAATCTCCATCACCTTCCCCATCTGCCTCAGCAACACCCCCAACAGTGCTGAAGCCTCCATCCCCTGATCGAAATGATTCTGCCTCTCCTTCTCCCCCACCTTCACCAGGCTCTACAACACAACTTGAAACTAACTCATCAAAGAATCATCGAGTTTTGGTTGGAGTTGTGGGTGGTGCTGTATTTCTTCTCATTTCAGTCATTGGAATATATCTTTATAGAACCAACAAGGTTGGTAGTGTAAAACCATGGGCCACGGGATTAAGTGGACAGCTTCAGAAGGCATTTGTGACAGGTGTGCCAAAGCTAAAGAGATCAGAACTTGAAGCAGCATGTGAAGATTTTAGTAATGTTATTGGTGCTTCACCCATTGGTACAGTGTACAAAGGGACTTTATCTAGAGGAGTTGAAATAGCTGTGGCCTCTGTTATGGTGACATCATCCAAAGATTGGTCAAAGACTTCAGAAGCCCAGTTTCGGACGAAGATAGATGAATTATCAAAAGTGAACCACAAGAATTTTGTAAATCTTCTTGGATATTGTGAAGAAGATGACCCTTTCACCAGAATGGTTGTTTTTGAATATGCCCCAAACGGAACACTCTTTGAGCATTTACACATAAAAGAAGCTGAGCACTTGGATTGGGGAACAAGACTTAGAATTGCCATGGGCATGGCATACTGCCTGCAACATATGCACCAATTAGACCCTCCTTTGGCCCATAGCAACCTGAATTCTTCAGCTGTCCATCTAACTGATGATTATGCTGCCAAAATTTCGGATTTGAGTTTCTGGAATGAAATGGTTCCAGCTGAGATAGTAAAAGCTGCTGCTGGAAAACACACTGACATGACATTAGCAAGTAACATTTACTGCTTTGGTGTTATATTATTTGAAATGGTAACAGGCCGTCTCCCTTATTCAGTTGATAGTAATGGCTCACTTGAAGACTGGGCTTCACACTATTTACAAGGGGACAAACCCCTCAAAGAAATGGTGGATCCAACTCTAGCATCCTTCCAAGAAGAACAGCTGGAACAAGTTGCTGGTTTGATTCAATCTTGTGTCCACCCTGATCAAGAGAAGAGACCAACAATGGAAGAAGTTTGTGAGAGATTAAGAGAGATAACAAAAATAACTCCAGAAGCAGCTGTTCCAAAACATTCTCCACTTTGGTGGGCAGAGCTTGAGATTTCTTCTGTAGAGGCAAGCTGA 1932 0.4187 MSNNWKFSRFRDFRGVLCLLALCLLFQSFGLCCSLNEEGKALLKLKQGIVSDPFGALSNWVDDEVVIDPCNWFGVECSDGRVVVLNLKDLCLEGNLAPELANLVHMKSIILRNNSFYGIIPEGIVHLNELEVLDLGYNNFSGPLPTDLGSNMSLTILLLDNNDLLCGFSPEINELKMLSESQVDENQLIGAEKMPHCMGRSITRHVGQNKKGLRILLQTHNRTHEDPYNREANLTNIPAQSPSPSPSASATPPTVLKPPSPDRNDSASPSPPPSPGSTTQLETNSSKNHRVLVGVVGGAVFLLISVIGIYLYRTNKVGSVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGASPIGTVYKGTLSRGVEIAVASVMVTSSKDWSKTSEAQFRTKIDELSKVNHKNFVNLLGYCEEDDPFTRMVVFEYAPNGTLFEHLHIKEAEHLDWGTRLRIAMGMAYCLQHMHQLDPPLAHSNLNSSAVHLTDDYAAKISDLSFWNEMVPAEIVKAAAGKHTDMTLASNIYCFGVILFEMVTGRLPYSVDSNGSLEDWASHYLQGDKPLKEMVDPTLASFQEEQLEQVAGLIQSCVHPDQEKRPTMEEVCERLREITKITPEAAVPKHSPLWWAELEISSVEAS 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi142g00012 643 SUPERFAMILY L domain-like 38 192 - -
Sebi142g00012 643 SUPERFAMILY Protein kinase-like (PK-like) 335 612 IPR011009 -
Sebi142g00012 643 Gene3D Phosphorylase Kinase; domain 1 325 434 - -
Sebi142g00012 643 MobiDBLite consensus disorder prediction 245 276 - -
Sebi142g00012 643 ProSiteProfiles Protein kinase domain profile. 352 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi142g00012 643 Pfam Leucine rich repeat N-terminal domain 36 78 IPR013210 -
Sebi142g00012 643 Gene3D Ribonuclease Inhibitor 33 232 IPR032675 -
Sebi142g00012 643 Gene3D Transferase(Phosphotransferase) domain 1 435 626 - -
Sebi142g00012 643 Pfam Leucine rich repeat 105 164 IPR001611 GO:0005515
Sebi142g00012 643 FunFam Nuclear pore complex protein NUP107 35 194 - -
Sebi142g00012 643 PANTHER PROTEIN MALE DISCOVERER 2 17 641 - -
Sebi142g00012 643 MobiDBLite consensus disorder prediction 221 285 - -
Sebi142g00012 643 FunFam Inactive receptor-like serine/threonine-protein kinase 326 434 - -
Sebi142g00012 643 Pfam Protein tyrosine and serine/threonine kinase 355 612 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi142g00012 Sebi-Chr142 222548 226610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi142g00012 14 612 Receptor kinase-like Gene Family AT5G16000 27.172 3.56e-50 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Sebi142g00012 PK_Tyr_Ser-Thr 1.1e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi142g00012 - - gmx:100784541 974.926