Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi141g00064 ATGGGTTGCGTGCTCGGGACACCGGCTGGTGACGGAGCTCAGAGCCGTCGCCGGAACGGCCAGCGTAACGTTGCTTCTGACGCAGGTAATAATGCCGTTAGGGTTCGGGAGAGTCGACTAACGAATCGCCACACCGGCGATTTTCCAGGGACTCTTCCGGCGCCGGAGCGCCGGAAACCTAGGCTCGATCCGTGCGCGGTGAATCAACAAGGTTGGCCGTCTTGGTTGATGGCCGTCGCCGGCGATGCAATCGGCGATTGGACTCCTCGCCGTGCCAACACATTCGAGAAGCTTGCTAAGATTGGGCAAGGGACGTATAGCAATGTGTATAAGGCTAAAGACCTTCTTACGGGGAAGATTGTGGCTTTGAAGAAAGTTAGATTTGATAATTTGGAGCCAGAGAGTGTGAAGTTCATGGCAAGGGAGATACTTGTTCTGCGGAGGCTTGATCACCCCAATGTTGTAAAGCTTGAAGGCTTGGTTACTTCTAGAATGTCATGCAGTCTTTACTTGGTATTTGAGTATATGGAGCATGATCTTGCAGGGCTTGCAGCTGGCCAAGGTGTTAAGTTCACTGAACCTCAGGTCAAATGCTTTATGAAGCAATTACTTTCTGGTCTTGAGCATTGCCACAGTCAAGGTGTATTGCACCGTGATATCAAGGGTTCCAATCTGCTTATTGACAATGAAGGAATCCTTAAAATTGCAGATTTTGGACTGGCAACTTTCTATGACCCTAAGCAAAAGCAGCCCATGACAAGCAGAGTTGTGACCCTTTGGTATCGCCCCCCTGAGCTTCTTCTTGGGGCTACATTATATGGTGTAGGTATTGACCTTTGGAGTGCTGGTTGCATCTTGGCAGAGCTGCTTGCTGGGAAGCCAATCATGCCTGGCCGCACAGAGGTTGAACAACTGCACAAAATATTTAAGTTGTGTGGCTCTCCATCTGAGGAATATTGGAGGAAGTATAGATTGCCGAATGCTACAATCTTTAAGCCACAGCAGCCATATAAACGTAGTATCTCAGAAACATTCAAGGATTTTCCTCCATCATCACTGCCTCTAATTGAAACTCTTCTTGCAATAGATCCTGATGATCGTGGCACTGCCTCAGCTGCTCTAAATAGTGAATTCTTTACCACTGAGCCCTATGCTTGTGAACCATCGAGTTTGCCAAAGTATCCTCCCAGCAAAGAATTGGACGTAAAACTGAGAGATGAAGAAGCCAGAAGGCAAAAAGCTCTTAATGGAAAAGCAAATGCAGTTGATGGCACCAAAAGAGTCAGAGCACGTGAGCGTGGTCGGGCCATTCCAGCCCCTGAAGCCAATGCAGAGATTCAAACAAACTTAGATAGGTGGAGAGTTGTGACCCATGCAAATGCAAAAAGCAAGAGTGAGAAATTTCCACCACCTCATCAAGATGGAGCTGTTGGATATCCACATGATGCATCAGATAAAGGACCTGTTTCATTTGGCGCCCCCGATGCTTCGTTTAGTTCAGGGATATTTAATACAAAACCATCTGGACCTGTTAGAAGCCATGATGCTGCAGGACATTACAGAGGGACCAAAACTAAAAAAGAAGACTCCCAGATGGGGTCATCATGGATATTTATGCGCCCATTCAAGCCATCAACAATTGGACTTTCAATGGATTTATTATTTAGGAGCAAATAA 1677 0.4687 MGCVLGTPAGDGAQSRRRNGQRNVASDAGNNAVRVRESRLTNRHTGDFPGTLPAPERRKPRLDPCAVNQQGWPSWLMAVAGDAIGDWTPRRANTFEKLAKIGQGTYSNVYKAKDLLTGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCFMKQLLSGLEHCHSQGVLHRDIKGSNLLIDNEGILKIADFGLATFYDPKQKQPMTSRVVTLWYRPPELLLGATLYGVGIDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWRKYRLPNATIFKPQQPYKRSISETFKDFPPSSLPLIETLLAIDPDDRGTASAALNSEFFTTEPYACEPSSLPKYPPSKELDVKLRDEEARRQKALNGKANAVDGTKRVRARERGRAIPAPEANAEIQTNLDRWRVVTHANAKSKSEKFPPPHQDGAVGYPHDASDKGPVSFGAPDASFSSGIFNTKPSGPVRSHDAAGHYRGTKTKKEDSQMGSSWIFMRPFKPSTIGLSMDLLFRSK 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi141g00064 558 FunFam probable serine/threonine-protein kinase At1g54610 82 177 - -
Sebi141g00064 558 MobiDBLite consensus disorder prediction 14 28 - -
Sebi141g00064 558 MobiDBLite consensus disorder prediction 1 63 - -
Sebi141g00064 558 FunFam probable serine/threonine-protein kinase At1g54610 178 419 - -
Sebi141g00064 558 MobiDBLite consensus disorder prediction 461 532 - -
Sebi141g00064 558 Gene3D Transferase(Phosphotransferase) domain 1 178 419 - -
Sebi141g00064 558 ProSiteProfiles Protein kinase domain profile. 95 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi141g00064 558 Pfam Protein kinase domain 95 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi141g00064 558 Gene3D Phosphorylase Kinase; domain 1 82 177 - -
Sebi141g00064 558 PANTHER CELL DIVISION PROTEIN KINASE 93 383 - -
Sebi141g00064 558 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Sebi141g00064 558 SMART serkin_6 95 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi141g00064 558 ProSitePatterns Protein kinases ATP-binding region signature. 101 124 IPR017441 GO:0005524
Sebi141g00064 558 CDD STKc_CDK9_like 95 379 - -
Sebi141g00064 558 SUPERFAMILY Protein kinase-like (PK-like) 89 384 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi141g00064 Sebi-Chr141 1430674 1434435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi141g00064 87 413 Core Cell Cycle Gene Families AT5G10270 52.000 4.80e-117 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Sebi141g00064 Pkinase 2.8e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi141g00064 K08819 - gmx:100807756 1029.62