Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi141g00050 ATGGAAAGAGAACGAACCCGGAAACGGCCTCGTCTCGCATGGGATGTAGCCCCTCCTTCAGAGCATGAGGCGCAAAGGGCTCTGGTAGTGGTGGGTGACGGAAGAATGATAAAATCCTCAGCAAGATGGATGAAGCATATTGCTAGTGCTGTAGGCACCTTTGGTCGAGTTTTGGAATGTTGGGATCGCCAAACTAGAGAGTATGTGGCTATCAAGGTAATTAGAAGCATACAGAAATATCGAGATGCAGCTATGCTTGAGGTTGATGTGCTTCAATGTCTAGCAAAGAATGATCGAGGAAGCTCACGCTGTGTGCAGATCCGAAATTGGTTTGATTACAGAAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGTGAATTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGAACTACGCCTAATCCACACTGACCTGAAGCCAGAAAATATACTTCTTGTTTCTTCTGAATATGTTAAGCTCCCTAGCAATAAGAGGGTTTCCTCAGGTGAAACGCAATTCAGGTGCTTGCCCAAGTCAAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCATTTGATAATCAGAATCATAGCTCCATTGTTTCAAAGTTCGAGGATTCAACTTATGTTTTTTAA 708 0.4223 MERERTRKRPRLAWDVAPPSEHEAQRALVVVGDGRMIKSSARWMKHIASAVGTFGRVLECWDRQTREYVAIKVIRSIQKYRDAAMLEVDVLQCLAKNDRGSSRCVQIRNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHELRLIHTDLKPENILLVSSEYVKLPSNKRVSSGETQFRCLPKSSAIKLIDFGSTAFDNQNHSSIVSKFEDSTYVF 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi141g00050 235 SMART serkin_6 43 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi141g00050 235 ProSiteProfiles Protein kinase domain profile. 43 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi141g00050 235 SUPERFAMILY Protein kinase-like (PK-like) 52 225 IPR011009 -
Sebi141g00050 235 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Sebi141g00050 235 Gene3D Phosphorylase Kinase; domain 1 52 123 - -
Sebi141g00050 235 Pfam Protein kinase domain 52 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi141g00050 235 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 42 227 - -
Sebi141g00050 235 Gene3D Transferase(Phosphotransferase) domain 1 97 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi141g00050 Sebi-Chr141 1154993 1157008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi141g00050 52 179 EF-hand Containing Proteins AT5G22840 38.806 1.09e-23 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Sebi141g00050 Pkinase 9.5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi141g00050 K08287 - gmx:100782453 377.096