Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi141g00040 ATGGCAAAAGATCAGCAAAAACAGAACCCTGCAGCAAATTCCAATTCTGGGCAAAACCAAAACCAAAACCAGGGTAAAGGCGAAGAAAAGCAATTGGAACTGGAAAACGAGGAGGCTAAGACCCCTTTGCCCCTCAGTGTTACTTCCCGGGCTTTGTACATGTTGGGAGACATCAAAGCAGGGCCTGCGTTTAAGTTCACGCAATGGCTCCAATTAGTTCGTAAACGCACTTCCAACTATCGCTCCTCTGGCTTCCCTCACCGTCCTTCGACCATGCCTTCTAGCCCAGGGGAATCTACTAGGGATGCAAAAATTGAGCAGCTTCCAGAGCAAACAGAAATTAGTTTGTGGGAGAGACTTGGTAAAGCAGAAATGTTGGACATTGAATCGAGCTCCTTTTCTTGGGACAGGCTCTCTTCACTTCACCATACTGAGCACACTTGCAGCAATGAACATTCTGAGGATGAAATGAACAGGGCTCTTGAGGTAACAGTAAATTCTGGAGGGGTTGTCTTCTTTGCCTTTTTCAATGGCCTTGGGACTGATGATGTTTTTCCAAAAGAATCAGCAGCTGTTATAAAGATATCATCGTCAAGAATGGCAACACAATCTGAACGCCTTGGTTATGAATTTGCCAAGTGGTTGGGAGTTGAAACTCCACAGGCTAGAGTCATTCACAATACCAGTTCTGAATGGCTTCAAATAAAGAAAGCTACAGAAAATTATGTACATGGTTTACCTTTGCTTGAAAGCTCTAGCGCATTTGAATCCCAGGACTCTGCAGAGAGAATATCAGCAGCCCTTGGCAGGATAATGATGCTTGATCTTGTCATCAGAAATGAAGATAGGCTCCCTTGCCGTGAACTTAGATGGCGTGGGAACTCTGCAAATTTGTTATTGGCTGAGAAGATGATCTCTGCGAATACAGATACACTAGGAGAAGCTTTTGATTCTGCAATGAACCAATATGGACCAAGGGTGATCAGGGCCCTTAAGAAAGAAAGAAGGTCAGCTTCAGTAGATAGCAGATTGAATTCTCAAAATCTTGGAATGGAATCACAAGGTTCTTATCTTTCAGAGATCAGGGAATCATTAACATCCACTGACATGAGCCTTAAAAGTCAAACATCACGAAAATCTTTGTTTACTGACTTCAACATTGTGGCTATTGACTCTGGTGTTCCTCGCCGACCCCCTGCTGGAAAACGTGCGGATGATCAGGTCAATTATCCTAAGTTGGTTGAGTTACTACTAAATAGCTCTGAGTTTTCCTCTAACCTGTTACATGATATAACTGGAGGGAGATTAGGATGTCCCTCCCCAGAAGACATAAATACAACAACTGATGTACATGCAAGTGATGCAACATCAGTGGTTCATGAGTTCCGTAGTGGTTTCCGTGCTGCCCTTAGGGATCTGCAGGGATTCCATTTATTCCTACTTACACTTAGCCAAAAACTTGATAACTTGTTACGATCAATTATAAGCAAAATATCATTGGGGGAGTCTGAAAAAGAGGATTCAGTGGTTCCTGACTCACCTTCACCGATTGCTGCTGGTAGTTGTCCCTCACCAATAAGCAAGGAGAGGTTTTCTCATGATAGCCATCAAGATTTTAGTGATTCAGAATCACAGAGAACTGCTCCAAGGGCATCATCATCTTCTGGCAATAGAGATTGCTGCGACTCTGCTTCTTCTGTTTCAAGAGATTGTTCGCATGGAAAGTTCTCTAAAGGAAGTGGGGAGCCACTTCATGGTCTCCGCTTGACAGCTAAACTCCGTGACTTCCATAAATTTGCAAAGGTTGACACAGAATCTTATAAAGAATTGGAACAATGGAACGAAATGCTTAAAAATGATGTTATCAAGTTATGCCAAGAGAACAATTTCAATACCGGATTTTTTGAGGGCAGTGATAACAACACTGTTGTTGATACATATGAACTGAAGGTCAGACTGGAGCATATCCTTGAGAGGATTGTGTTGATATCTGAGGCTGCAAACACAGAGAAACCATCTGCTGTTACAAATAGTCTGTTCATTGGTGGAGCACTAGCTGCAAGATCTATATACACACTGCAACGCTTGGGAATCACCCATATTTTGTGTTTGTGTACTAATGAAATTGGACAGTCAGATTCTCAGTTTCCTGATCTATTCACATACAAAAATTTCTCTGTGTGTGACAATGAGGATTCTAACATCAGCAGCATATTTGATGAAGCTTGTGATTTTATAGATTATGTTGAGCAAACAGGTCAGAGAGTTTTAGTTCATTGCTTCGAGGGAAAAAGCAGAAGTGTCACTTTGGTCCTTGCTTACTTAATGCTCAGGAAGAAGTTCACCTTATTAGAAGCATGGAATGCTCTGAAACAAGTGCACCGTCGAGCACAGCCCAATGATGGTTTTGCAAAGATCTTACTGGAGCTGGATCAGAAACTGCATGGGAAGGTTTCAATGGAATGGCAGCAACGAAAACCAATGATGAAAATTTGCCCTATATGTGGCAAGAATGCTGGACTTAGCAGCAGCTCACTTAAGCTCCATCTTCAGAAATCACATAGAAAGCTATCATCAGGGAGCGTAGATAGTGCCATGACAATGGAGATCCAAAGGCATTAA 2622 0.4233 MAKDQQKQNPAANSNSGQNQNQNQGKGEEKQLELENEEAKTPLPLSVTSRALYMLGDIKAGPAFKFTQWLQLVRKRTSNYRSSGFPHRPSTMPSSPGESTRDAKIEQLPEQTEISLWERLGKAEMLDIESSSFSWDRLSSLHHTEHTCSNEHSEDEMNRALEVTVNSGGVVFFAFFNGLGTDDVFPKESAAVIKISSSRMATQSERLGYEFAKWLGVETPQARVIHNTSSEWLQIKKATENYVHGLPLLESSSAFESQDSAERISAALGRIMMLDLVIRNEDRLPCRELRWRGNSANLLLAEKMISANTDTLGEAFDSAMNQYGPRVIRALKKERRSASVDSRLNSQNLGMESQGSYLSEIRESLTSTDMSLKSQTSRKSLFTDFNIVAIDSGVPRRPPAGKRADDQVNYPKLVELLLNSSEFSSNLLHDITGGRLGCPSPEDINTTTDVHASDATSVVHEFRSGFRAALRDLQGFHLFLLTLSQKLDNLLRSIISKISLGESEKEDSVVPDSPSPIAAGSCPSPISKERFSHDSHQDFSDSESQRTAPRASSSSGNRDCCDSASSVSRDCSHGKFSKGSGEPLHGLRLTAKLRDFHKFAKVDTESYKELEQWNEMLKNDVIKLCQENNFNTGFFEGSDNNTVVDTYELKVRLEHILERIVLISEAANTEKPSAVTNSLFIGGALAARSIYTLQRLGITHILCLCTNEIGQSDSQFPDLFTYKNFSVCDNEDSNISSIFDEACDFIDYVEQTGQRVLVHCFEGKSRSVTLVLAYLMLRKKFTLLEAWNALKQVHRRAQPNDGFAKILLELDQKLHGKVSMEWQQRKPMMKICPICGKNAGLSSSSLKLHLQKSHRKLSSGSVDSAMTMEIQRH 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi141g00040 873 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 740 792 IPR000387 GO:0016311|GO:0016791
Sebi141g00040 873 MobiDBLite consensus disorder prediction 544 560 - -
Sebi141g00040 873 Pfam Dual specificity phosphatase, catalytic domain 686 812 IPR000340 GO:0008138|GO:0016311
Sebi141g00040 873 MobiDBLite consensus disorder prediction 1 27 - -
Sebi141g00040 873 Pfam Actin-fragmin kinase, catalytic 241 373 IPR015275 -
Sebi141g00040 873 Pfam Actin-fragmin kinase, catalytic 113 237 IPR015275 -
Sebi141g00040 873 FunFam Dual specificity protein phosphatase PHS1 643 817 - -
Sebi141g00040 873 MobiDBLite consensus disorder prediction 1 41 - -
Sebi141g00040 873 SUPERFAMILY Protein kinase-like (PK-like) 68 407 IPR011009 -
Sebi141g00040 873 Gene3D Protein tyrosine phosphatase superfamily 653 826 IPR029021 -
Sebi141g00040 873 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 24 241 IPR035010 GO:0004721|GO:0009737|GO:0043622
Sebi141g00040 873 MobiDBLite consensus disorder prediction 80 104 - -
Sebi141g00040 873 SMART dsp_5 671 813 IPR020422 GO:0006470|GO:0008138
Sebi141g00040 873 MobiDBLite consensus disorder prediction 80 101 - -
Sebi141g00040 873 MobiDBLite consensus disorder prediction 503 560 - -
Sebi141g00040 873 MobiDBLite consensus disorder prediction 529 543 - -
Sebi141g00040 873 CDD DSP 672 809 - -
Sebi141g00040 873 ProSiteProfiles Dual specificity protein phosphatase domain profile. 671 816 IPR020422 GO:0006470|GO:0008138
Sebi141g00040 873 Gene3D - 245 379 IPR036940 -
Sebi141g00040 873 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 670 816 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi141g00040 Sebi-Chr141 961048 967340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi141g00040 23 872 Protein tyrosine phosphatase (PTP) family AT5G23720 61.359 0.0 1041
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi141g00040 K14165 - gmx:102661225 1304.27