Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi141g00033 ATGAGTAGTGGGGAGGAGATGGAAGATGCAAGTTTTGATGGGTCAGGGTTGAACTATGATTCTGATGACTTGACTGAGAGTAACAACAATAAGATGGAAGAGAATAATGGCAAGAATTGTGGAAACGCCTCCAATGGCAACAGCACAGTCACTGGTGTCGATCACAAAGGGAAGAAGAAGGGAATGCCAGCTAAGAATTTGATGGCTGAACGCCGTCGTAGGAAGAAGCTAAATGATAGACTCTATATGCTGAGGTCTGTTGTTCCAAAGATTAGCAAAATGGACAGGGCTTCAATCCTTGGAGATGCAATTGAGTATCTGAAGGAACTCCTGCAAAGGATCAATGACCTTCATAACGAGTTGGAATCAACACCTGCTGGCTCTTCACTCACACCTGCCTCAAGCTTCCATCCTTTGACACCTACTCCACCTTCACTCCCTAACCGTATTAAAGAAGAACTATGCCCCAGCTCATTGCCAAGCCCTAATGGACAACCTGCTAGGATTGAGGTTCGGTTGCGTGAAGGAAGGGCTGTAAATATCCACATGTTTTGTGCCCGCAAACCTGGTCTGTTGCTGTCAACCATGAGGGCTTTGGATAACCTTGGGTTAGACATTCAGCAAGCTGTTATCAGCTGTTTCAATGAATTTGCTATGGATATTTTTCGAGCTGAGCAATGCAAAGAAGGTCAGGAGGTCCATCCGGAGCAGATCAAAGCAGTACTCTTGGATTCAGCTGGCTTCCATGGCATGATCTAA 759 0.4559 MSSGEEMEDASFDGSGLNYDSDDLTESNNNKMEENNGKNCGNASNGNSTVTGVDHKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPAGSSLTPASSFHPLTPTPPSLPNRIKEELCPSSLPSPNGQPARIEVRLREGRAVNIHMFCARKPGLLLSTMRALDNLGLDIQQAVISCFNEFAMDIFRAEQCKEGQEVHPEQIKAVLLDSAGFHGMI 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi141g00033 252 SMART finulus 67 116 IPR011598 GO:0046983
Sebi141g00033 252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 110 IPR011598 GO:0046983
Sebi141g00033 252 CDD ACT_UUR-ACR-like 181 241 - -
Sebi141g00033 252 Pfam Helix-loop-helix DNA-binding domain 68 110 IPR011598 GO:0046983
Sebi141g00033 252 MobiDBLite consensus disorder prediction 18 52 - -
Sebi141g00033 252 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 18 248 - -
Sebi141g00033 252 MobiDBLite consensus disorder prediction 1 64 - -
Sebi141g00033 252 Gene3D - 55 125 IPR036638 GO:0046983
Sebi141g00033 252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 129 IPR036638 GO:0046983
Sebi141g00033 252 CDD bHLH_AtAMS_like 64 129 - -
Sebi141g00033 252 Coils Coil 100 124 - -
Sebi141g00033 252 FunFam BHLH transcription factor 57 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi141g00033 Sebi-Chr141 890355 892430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi141g00033 6 225 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 73.182 3.11e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi141g00033 HLH 6.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi141g00033 - - gmx:100217341 437.958