Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi141g00032 ATGGCATCATCAGAGGTGACGATGAAGGGGAATTGTTTGAATCACAACGATGGTAGTAGGAACGCTACAACCGAGGGTCATTCACCCTCCACGGCGAGAGGTAGGGAGCTATGGCATGCCTGTGCTGGTCCCCTTGTAACTGTGCCCAGGGAAGGAGAACGGGTCTTTTATTTCCCTCAGGGACATATTGAACAGGTGGAGGCGTCGACGAATCAGGTGGCGGACCAGCATATGCCAGTGTACGATCTCCCACCCAAGATCCTTTGTCGAGTCATCAACGTGCAGTTGAAGGCGGAGCCGGACACGGATGAGGTGTTTGCCCAGGTCACCTTACTTCCAGAGGCAAATCAAGATGAGAATGCCGTGGAGAAAGAGCCTCCGCCTCCTCCGCCGCCGCGATTTCATGTTCATTCTTTCTGTAAAACTCTGACGGCCTCTGATACCAGTACCCATGGTGGGTTTTCCGTACTGAGACGGCATGCTGATGAATGCCTTCCTCCACTGGACATGTCAAAGCAGCCACCAACCCAGGAATTGGTGGCGAAGGATTTGCACACGAATGAGTGGCGGTTTAGACATATCTTCCGGGGTCAACCCCGGAGACACTTACTTCAGAGTGGTTGGAGTGTTTTTGTAAGCTCCAAAAGGCTTGTTGCCGGGGATGCATTTATATTTCTAAGAGGTGAGAATGGGGAACTTCGTGTTGGTGTCAGGCGAGCAATGAGGCAGCAGGGTAATGTTCCATCCTCAGTTATTTCTAGCCACAGCATGCATCTTGGGGTCCTTGCAACTGCTTGGCATGCCATCTTGACCAAGACCATATTCACTGTTTATTACAAGCCTAGGCCTAAAAGGCCTCGGTCTAATGCTGTTCCATCATCCCCAGGTTCTTCTGTTCTTACTCGAGAAGCATCATCTAAAGCAAGCGTAGACCCTCTACCAGCAAATGGATTTCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTGCAGAAAGCAATGAGCCTGACACTGCTGAGAAGTCAGTCGTCTGGCCACCTGCAGTAGATGATGAGAAAATTGATGTTTCTACTTCAAGGAGGTATGGGTCAGAGAGCTGGATGTCAATGGGGAGGAATGAGCCTACTTATTCAGATCTTCTTTCAGGCTTTGGGGCCAGTGGAGATCCTTCTCATCCATCCTTGGTTGACCAAATGACCCATGTAGCTTATCCTGCTAGAAAGCATTCAGTGGATCATGAAGGCAAACTTCATGTTCCTCATCCGTGGCCTGTAATGCCTTCTAGTCTATCACTAAACCTCTTGGGACAGTACACTGCGTTTGGTGAATACCCCATGCTTAATGGTCATAAAGTTGAGCATCTACATGGAAATTTGATGCCACCTCCACCCCCAACTCAATATCAGAGCCATTGTTCAAGAGAGCTAATGTCAAAACCAATGTCTTGTGAGTCTGTGAAACCAAAAGATGGTGACTGTAAGCTATTTGGCATCTCACTTATCAGTAGCTCTGTTGCACCAGAGCCTTCTGTATCTCAAAGAAATGTGACAAGCGACACAGCTGGTCCAATGCATATAACATCACACCAACAACGAATGTCAGAAAATGATCTGAAGTCAGATCACTCAAAGTGCTCAAAACAGACAGATGGTCAAGTTATCAATGATGACCATGATAAGGCATTGCATACTTCTCATCTGCATCTGAAAGATGTTCAATCCAAATCACACGGTGGTTCTGCTAGGAGTTGCACTAAGGTTCATAAGAAGGGGATTGCACTTGGTAGGTCGGTGGACCTTACTAAGTACAGTGACTATGATGAATTGGTTGCTGAATTGGATCAGCTGTTTGAATTTGGGGGAGTTCTGTGCCATGGTTCGGAAATTTATATCTACCCTAAAGAGGAGATTCAGAAAATGAGCCCGGGTACATTGAGTTCGAAAAATGAAGAAAATCAGTCAGCTAGCGAAGGAGAAGTTAAAGGTGAACTGCATCAGAAGTTAAATTCAGACAATGGTCTTGATGCCTGA 2043 0.4699 MASSEVTMKGNCLNHNDGSRNATTEGHSPSTARGRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQHMPVYDLPPKILCRVINVQLKAEPDTDEVFAQVTLLPEANQDENAVEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHTNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTKTIFTVYYKPRPKRPRSNAVPSSPGSSVLTREASSKASVDPLPANGFPRVLQGQEFSTLRGNFAESNEPDTAEKSVVWPPAVDDEKIDVSTSRRYGSESWMSMGRNEPTYSDLLSGFGASGDPSHPSLVDQMTHVAYPARKHSVDHEGKLHVPHPWPVMPSSLSLNLLGQYTAFGEYPMLNGHKVEHLHGNLMPPPPPTQYQSHCSRELMSKPMSCESVKPKDGDCKLFGISLISSSVAPEPSVSQRNVTSDTAGPMHITSHQQRMSENDLKSDHSKCSKQTDGQVINDDHDKALHTSHLHLKDVQSKSHGGSARSCTKVHKKGIALGRSVDLTKYSDYDELVAELDQLFEFGGVLCHGSEIYIYPKEEIQKMSPGTLSSKNEENQSASEGEVKGELHQKLNSDNGLDA 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi141g00032 680 MobiDBLite consensus disorder prediction 513 535 - -
Sebi141g00032 680 ProSiteProfiles B3 DNA-binding domain profile. 139 241 IPR003340 GO:0003677
Sebi141g00032 680 SMART B3_2 139 241 IPR003340 GO:0003677
Sebi141g00032 680 MobiDBLite consensus disorder prediction 283 320 - -
Sebi141g00032 680 MobiDBLite consensus disorder prediction 645 680 - -
Sebi141g00032 680 CDD B3_DNA 137 239 IPR003340 GO:0003677
Sebi141g00032 680 MobiDBLite consensus disorder prediction 658 674 - -
Sebi141g00032 680 FunFam Auxin response factor 137 241 - -
Sebi141g00032 680 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 283 629 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sebi141g00032 680 MobiDBLite consensus disorder prediction 513 556 - -
Sebi141g00032 680 MobiDBLite consensus disorder prediction 536 556 - -
Sebi141g00032 680 Gene3D - 582 650 - -
Sebi141g00032 680 MobiDBLite consensus disorder prediction 290 305 - -
Sebi141g00032 680 Pfam B3 DNA binding domain 139 240 IPR003340 GO:0003677
Sebi141g00032 680 MobiDBLite consensus disorder prediction 1 33 - -
Sebi141g00032 680 Gene3D - 136 241 IPR015300 -
Sebi141g00032 680 MobiDBLite consensus disorder prediction 1 30 - -
Sebi141g00032 680 SUPERFAMILY DNA-binding pseudobarrel domain 135 268 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi141g00032 Sebi-Chr141 884978 889110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi141g00032 281 662 B3 DNA Binding Superfamily AT5G62000 43.567 5.12e-93 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi141g00032 B3 1.4e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi141g00032 - - qsa:O6P43_030663 766.148