Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi141g00020 ATGCCTTTGGAAAGAATGGACCAGAGGGGTGTTGCTGCCTCATCCCACTTTTTTGATGACATTTCTTATGCTTCTGAGAGGAATGTTGGATTGCGGAAGCCAAAATCTATTCATGATCATTATCCAGAAGGAAAGAGTGAAATGGTGGCATCACCTGGCAGCATTTTGAATGCTTCATCACCCCTTGGAACAAGTGCAAAAACAGGCTTGCCAATGTCGCAGACTAGTCTATCTGGGGAAATTTCAGGAAACCTACACTTTGGTGGAGAAGCAGGCATTATAGGCATGCTGAAGGATTCTAAGGAATCATTGAATTATCATCCGAGATCATGGTCTGATGTGCATAGGCAGCCAGCATCTAGCTCATATGGTTTAATTGGGAACAGGATTGTCACCAATGCAGGCTCACGTGAAAGTAGTCTATTCTCAAGTTCACTGTCTGATATATTTAGCCAAAAGTTGCGGTTATTGGGGAATGATGTTCTGTCTGATCAGCCCATTACTGTTGGTCCCTTTCCTGAGGAAGAACCATATAAATCTCCTGAAGAAATTGAGGCTGACACTATTGGAAGTCTCCTTCCTCATGAAGATGATCTGTTTTCTGGTGTCACTGATGAGTTAGGGAGCAGTGCTCATGCTAGAACGAGTGATGATTTTGAAGATTTTGATTTGTTCAGCAGTGGTGGAGGCATGGAGTTGGAAGGAGATGAACATTTAGTTTCAGGAAAAAGAACCAGTTGCATGGATGGGGATCCTGGTTACTTTGGGGGTTCTAAAGGAAAATTTCCTGTAAATGAACAATCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAGTGTAGAAGATTCTGAGCTAAAGACTCTCTTTGAGCAATATGGAGAGATCCGAACCATTTATACTGCCTGCAAGCATCGTGGATTTGTTATGATTTCTTATTATGACCTAAAGGCAGCACAAAATGCAATGAAAGCACTTCAAAATAGGTCATTGAAATCTAGGAAACTTGATATACATTATTCAATTCCAAAGGGAAATGCTCCAGAGAAGGATATTGGCCATGGTACCCTGATGATATCTGGTCTTGATTCATCTGTTTTGAATGATGAACTTAAACATATTTTTGGGTTTTATGGAGAAATTAAAGAAATTTATGAATATCCAGAAATGAATAATATCAAATACATTGAGTTTTATGATGTCCGAAGTGCAGAATCTTCTCTACGTGCATTGAATGGGATCTGCATTGCTGGGAAACACATCAAACTTGAACCTGGCCATCCTAGGATTGCAACATGTATGATGCAGCAGTCTCAAAAAGGACAAGATGAACCCGATCTTGGTCATAATCTCAATGACAACTTATTATTAAGACAGAAGGGAGTGTCTTCTGGAGTTATTGCATCTGGTGGCTGCTTGGAAAATGGATACAGTCAAAGATTTCAATCTGCATCACGGCTACCTTTGAATGCTTTCATTGATAACGCATTCTTTAATGTGAATTCTAGCATACACAAGACTGCAAGAGGGGCATCTGTTGGAAAAGTATCTGGTGTTAGTGAGTCCATTAACGTTGTTGATGCAATGCAATTTGCATCTGTTCCCAGATTCCACCCTCATTCTTTACCGGAGTATCGTGATAGTTTAGCTAATGGTAGTCCTTACAACTTTTCAAGCACCATTAACATGGCTGCAAATATTGGAACTGGATCAACAGAAGTGTCTGACAGCAGGCACATTCAGGGAATGGGCTCAACTGGGAACCTGGCGGAATTTAACGGAGGAGGAAATGGGAGCCACCCCCGTCAACTTTATCATATGTGGAACGGCTCCAACTTGCATCAGCAACCTCCATCAAATGGCATGCTTTGGCAGAAAACACCATCCTTTGTTAATGGTGCTTGTGCCCCATGTCCTCCACAGATTCCCAGCTTTCCCAGGACACCGCCTCATGTGCTGAGAGCATCACATATAGACCACCATGTTGGATCAGCGCCAGTTGTTACAGCCTCACCCTGGGAAAGACAGCATTCTTACTTGGGAGAGTCTCCTGATGCTTCTGGTTTTAGATTGGGCTCTCTAGGAAGTGCTGGTTTTCATGGTAGCTGGCAGTTGCAACCTCCAGATTTTTCTGGCAACATGTTTTCCCATGTTGGTGGGAATGGTACTGAATTGACATCCAATGCCGGGCAGGGCTCTCCTAAGCAGTTGTCTCATGTTTTCCCGGGGAGACTTCCCATGACTTCAATGTCAAAGTTTGATTCTACCAATGAACGAATGAGAAACCTCTACCATCGTAGAAGTGAAGCAAACAACAACAATGCTGATAAAAAACAATATGAACTTGACCTAGGCCGCATATTGCGTGGGGAAGACAACCGAACAACGCTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCTGCCATAGATGAGCAATGTCGAGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTGGTCAAATAATTCCATTCCACCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAGGTTGCTGTACTTGCATATGCCCGGATTCAAGGAAAAGCTGCTCTTATTGCTCATTTTCAAAATTCGAGCCTGATGAATGAAGATAAACGTTGCCGTCCTATTCTTTTCCATACAGATGGCCCAAATGCTGGTGATCCGGAGCCTTTCCCCTTGGGTACCAATATTAGACCGAGGCCTGGAAAATCTCGCATTAATGGTAATGAGGAGAATCGCAACCAAGGGAATCCTTCTACTTTGGCAACTGGAGAGGAATCTGCTAATGGAATAGACCCTTCAATGAGTTCTTCAAGGGATGCTGACTGA 2913 0.4195 MPLERMDQRGVAASSHFFDDISYASERNVGLRKPKSIHDHYPEGKSEMVASPGSILNASSPLGTSAKTGLPMSQTSLSGEISGNLHFGGEAGIIGMLKDSKESLNYHPRSWSDVHRQPASSSYGLIGNRIVTNAGSRESSLFSSSLSDIFSQKLRLLGNDVLSDQPITVGPFPEEEPYKSPEEIEADTIGSLLPHEDDLFSGVTDELGSSAHARTSDDFEDFDLFSSGGGMELEGDEHLVSGKRTSCMDGDPGYFGGSKGKFPVNEQSSRTLFVRNINSSVEDSELKTLFEQYGEIRTIYTACKHRGFVMISYYDLKAAQNAMKALQNRSLKSRKLDIHYSIPKGNAPEKDIGHGTLMISGLDSSVLNDELKHIFGFYGEIKEIYEYPEMNNIKYIEFYDVRSAESSLRALNGICIAGKHIKLEPGHPRIATCMMQQSQKGQDEPDLGHNLNDNLLLRQKGVSSGVIASGGCLENGYSQRFQSASRLPLNAFIDNAFFNVNSSIHKTARGASVGKVSGVSESINVVDAMQFASVPRFHPHSLPEYRDSLANGSPYNFSSTINMAANIGTGSTEVSDSRHIQGMGSTGNLAEFNGGGNGSHPRQLYHMWNGSNLHQQPPSNGMLWQKTPSFVNGACAPCPPQIPSFPRTPPHVLRASHIDHHVGSAPVVTASPWERQHSYLGESPDASGFRLGSLGSAGFHGSWQLQPPDFSGNMFSHVGGNGTELTSNAGQGSPKQLSHVFPGRLPMTSMSKFDSTNERMRNLYHRRSEANNNNADKKQYELDLGRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFNGKKWEKFNSEKVAVLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGTNIRPRPGKSRINGNEENRNQGNPSTLATGEESANGIDPSMSSSRDAD 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi141g00020 970 MobiDBLite consensus disorder prediction 905 970 - -
Sebi141g00020 970 CDD RRM1_MEI2_like 269 344 IPR034453 -
Sebi141g00020 970 SMART rrm1_1 356 424 IPR000504 GO:0003723
Sebi141g00020 970 SMART rrm1_1 271 339 IPR000504 GO:0003723
Sebi141g00020 970 SMART rrm1_1 796 874 IPR000504 GO:0003723
Sebi141g00020 970 SUPERFAMILY RNA-binding domain, RBD 267 426 IPR035979 GO:0003676
Sebi141g00020 970 PANTHER RNA RECOGNITION MOTIF-CONTAINING 46 959 - -
Sebi141g00020 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 428 IPR000504 GO:0003723
Sebi141g00020 970 CDD RRM3_MEI2_like 797 882 IPR034454 -
Sebi141g00020 970 SUPERFAMILY RNA-binding domain, RBD 796 881 IPR035979 GO:0003676
Sebi141g00020 970 Gene3D - 353 447 IPR012677 -
Sebi141g00020 970 Pfam RNA recognition motif 2 794 890 IPR007201 -
Sebi141g00020 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 422 IPR000504 GO:0003723
Sebi141g00020 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 336 IPR000504 GO:0003723
Sebi141g00020 970 Gene3D - 261 352 IPR012677 -
Sebi141g00020 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 343 IPR000504 GO:0003723
Sebi141g00020 970 MobiDBLite consensus disorder prediction 936 970 - -
Sebi141g00020 970 FunFam Protein MEI2-like 1 354 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi141g00020 Sebi-Chr141 536197 542402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi141g00020 267 421 Eukaryotic Initiation Factors Gene Family AT3G16380 25.568 1.17e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi141g00020 - - aprc:113865455 1598.18