Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi140g00028 ATGGAATTCATCACCAGAATCTTTCAACTTCGGCAGCTTCAGATTAATGGATCCTCCCTCTTCTTGCAACCTCAAAACAGAGGAAGGGATGGACTAGATCGGGAACTGTCCTCCGCATCGACAACAAACTTAGCCTCCGGGAGCTATAGGGAGAAGTGGAATGTGGAAGAGGAGAAGTCAGAGAAGCTATTGGACCTTCTGAACATAACGGACGCAGAAGCGAGGAAGAAGGAAGAGGCATTGACGGAGCTGAAGCAGGATAGATTGAACAAACGGAAGCCGCCTATTGTGTTGCAGGAGTTTGTGAACAATGGAGGCGTCATCTTTAAGGTGTACGTGGTTGAGGAGCACGTGAAGTATATGAAGAGGAAGTCGTTGCCGGATGTTAAAGAGGACAAGTTGGTTGGGGTTTCAGAGGATTTGTTGTCGTTCTCACAACAAAGAGGTGTTGCGTCAGGGAGTCTGGGGGAGAAGGACTGTTCGAATCTAATGCACGACTATGACAAAGATACGAACAAGATTATGAGCAATACTTGTGCTGTGAGGGATGTGCAAAAGATGATTGATGAAATGCTAAAGATGGTTGCTGAAATGACTAAGAGGGATGTGCTGAATCTGTTTGGTACAATGAAGCTAATAGGGGCAAGATACTTCAACAAAGGCTATGCATCTGTTGCTGGCCCACTCAATTCCTCCTTCGACATTAATGGTAGTTCTATTTCTAAAAGAACTCCTGTTCCTACGAGTGTCAATGGGAAAGTTGATGTTTCTAAGAATCGGTCCTGGGCATGTGAAAGACTCTGCTTCCTTGGAGATTGTGATAATGTTTCCATTGGATCCTTCCATGCTGCTAAGAAAGGGATTGTCGTTGTTTGCTCTGTTGGTGATTACTCCACAATCAGTTTTATTGAGGAAAATAATGTTGGAAATGCTGCTGCTGCACTTACGACTGGGTTAGCTCTCAAAACCAAGGGTGATGCTTTGAGTGTTGATCAGTCTGCTTTAATTGGAGAGTCTCTTCCAGTGACAAAGAATCCCTCCGATGAAGTATTTTCTGGATCAACTGTTAAGAAAGGTGAGATAGAAGTAGTTGTGATTGCTATTGGTGTGCACACCTTCTTTGGTAAAGTTGCTCATCTCGTGGACAGCACCAATCAAGTTGGGCACTTTCAGAAAGTCCTCACAACAATTGGTAATTTCTGCATTTGCTCAATTGTTGTGGGAGTAGTCAATGAGCTCATAGTCATGTACCCAATACAACACCGCAAGTATAGAGATGGGATTGACAATTTGTTGGTGCTATTGATTGGAGGAATTCCAATTGCCATGCAAACTATTTTGTCTGTTACTATGGCTATTGGTTCTCACAAACTTTCCCAACAAGGTGCAATTACAAAACGTATGACAAATATTAAGAAGCTTGAAGGGTGA 1431 0.4319 MEFITRIFQLRQLQINGSSLFLQPQNRGRDGLDRELSSASTTNLASGSYREKWNVEEEKSEKLLDLLNITDAEARKKEEALTELKQDRLNKRKPPIVLQEFVNNGGVIFKVYVVEEHVKYMKRKSLPDVKEDKLVGVSEDLLSFSQQRGVASGSLGEKDCSNLMHDYDKDTNKIMSNTCAVRDVQKMIDEMLKMVAEMTKRDVLNLFGTMKLIGARYFNKGYASVAGPLNSSFDINGSSISKRTPVPTSVNGKVDVSKNRSWACERLCFLGDCDNVSIGSFHAAKKGIVVVCSVGDYSTISFIEENNVGNAAAALTTGLALKTKGDALSVDQSALIGESLPVTKNPSDEVFSGSTVKKGEIEVVVIAIGVHTFFGKVAHLVDSTNQVGHFQKVLTTIGNFCICSIVVGVVNELIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMQTILSVTMAIGSHKLSQQGAITKRMTNIKKLEG 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi140g00028 476 Coils Coil 67 87 - -
Sebi140g00028 476 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain 84 168 IPR040464 -
Sebi140g00028 476 SUPERFAMILY Calcium ATPase, transmembrane domain M 285 471 IPR023298 -
Sebi140g00028 476 PANTHER CALCIUM-TRANSPORTING ATPASE 324 475 - -
Sebi140g00028 476 Pfam E1-E2 ATPase 325 460 - -
Sebi140g00028 476 SUPERFAMILY Calcium ATPase, transduction domain A 323 381 IPR008250 -
Sebi140g00028 476 Gene3D - 66 209 - -
Sebi140g00028 476 Gene3D - 324 384 - -
Sebi140g00028 476 Gene3D - 385 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi140g00028 Sebi-Chr140 800276 802018 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi140g00028 290 476 Primary Pumps ATPases AT2G18960 63.393 4.88e-80 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi140g00028 K01535 - gmx:100785442 275.018