Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi13g00268 ATGGCGTTTGATCAAAACTCCAGCGCCAACGATATGCGGCCACCACCGACTGTGGTCCGAACTGTACCCGAAGAGCCACTCGTTTTGCCGGCGAGTACGACGGCGGTTAATGGAGCTTCCGGTGCGATGCCCCTCTTCTACCCTGCCTCTGTCTCTGATGCTGGCATGGTAGGAATGGGGTATGGAAATGTGGCTTCGGGTGCTGCTCCTACCACCTGGTGCGTTCGCCCTGCTGTGCCCATTCGTCATCCCACTGTGAACCCTGCTGCTGCGTTTAGTCATGCTCCTAGTTTCCCCAATCGGGTTGTTGGTGGCAATGCTGTTGATCTTTCGGGTAGCTTTGTGGCTACTGCTCATGGTTATCCTCTGAATTTGGGCAACTGGGTTACTGGTAATGCCTTGGATAATGGTCTTCAGGGCAATAGCAGAGTCGTTGGCAATGCCAGTGATCATGCTGGTGGTGGTGCTTTGGGTGGAAATGGTGTCAATCCCCCTGCAAGCCAGCGGGGTGATCAGGCAAGTGAAGAGGGCGGAGGGGATGATTCAGTGTCTGGGCGAAAATTGAAGATTATGTGTAGTTATGGTGGTAAGATTTTGCCTAGGCCTAGTGATGGAATGTTGAGATATGTTGGAGGGCAGACGAGGATCATAAGTGTTAAGAGAGATGTGAGATTTAATGATTTGGTGCAAAAGATGGTGAATATTTTTGGGCAACCTGTGGTTATCAAGTATCAGCTCCCTGATGAGGATCTTGATGCATTGGTCTCGGTTTCCTGCCCTGAAGATCTGGAGAATATGATGGAGGAGTATGAAAGGTTAATTGAGAGGTCTCCTGATGGTTCTCCTAAATTAAGGGTCTTTCTGTTTTCTGCTTCAGAACTTGATCCTTCTGGTGTGGTACAGTTTGTAAATTTACAAGATGGTGGGCAGAGATATGTTGAAGCTGTGAATGGAATTACTGATGGGATTGGTGGTAAACTCACAAGGAAAGGGAGCATTACAAGTGCAGCTTCTACACAAAATTCTGATTTGAGTGGAGTAGAGGCTCTTGATAACTCAAATGCTGTCCAAGGGGATGTCAGTGGGGCACCTGTGTCCAGTGCTTTATCACCTGAGGGGAATGTTGCTGCTTCACATGATGCTACTGCAAATTTTGTGGTTTCTGAGCCTGTTGCATCAATTTACTCAGATGCTTCTGCGGTTTCATTGGGCATACCTGTGACTAATTCTGGTCCAACTCAAGCTCCACCTTTCCAGAATGAGGTTGAGTTAGAGAAGTCTGTGCCCATTACTTTGTCTCAGCAGCAATTTGGGTTGCAGCAGTCTGGAATGGAAATTCCACCACCTGCACCTCTTCAGGCTTTTGTTGATCCTCGACAAGAAGTTATGAACCATGCGGATTATGTCCAGCTGCCTCCCCATATGGGATTCCCGAATCCTCAGCTCTTAGGTAAGCCTGGATCTATCTACTCCCAACATCAGTTCCATGATAATTCTCCTCGTTTAGCGTCCCATCAGGTAATCCCTGCAGTGCAAATGACAATGACTCAGCCATCTTCTCATGCTGGTGTAAGACCGAGTGTTATTCAACCACAAACATTCATGCAACTCCAGCAAAACCATTTGAACCAATATAATGATGAAAATACTTCAGGGCTAAGGATTCACCAGCTTCCTCCTGAACAAAGTTACAATGCATATCCAGTTCAATTCCCTTATGGAGGTAATTATGGTTGGGTCCAGGTTTCTCCACCAGAGCATGTCATTTTTCCTGATGCACTATTATCTCAACAACCAGCAATGATCCCTGAGAAAGTCCAAAGAGTGGAGGACTGTTATATGTGTCAGAAAAAACTGCCTCATGCACATTCAGATCCAGTTGTGCAGGATCAGCAAAATAGCTGTGCAGGTCCAATTGCTGATTCAATCCCAAATTACCATAGTCTCCCTATGGAGGACAATTTAAGACCTCAAGCAACAAATAAGGTTTTGGTGACTGCACCAATGAAGGAAGGCAATGTTGAGCAAGCAGTTGGGACCAGGCCCAGGGTCATTAGCAAATTGGAACCTCCAGGTGTAGTACACTGTACTGACGCAACTGGACTTCCTCTGGAACCTGAAGGTGAGAGGATTTTTATAGTGGACAGGTCTGATCATCCCAGAAATGCAGCAGTTATCCAGGAAACAGTTGGAAGAACAGGTGAAAAACAGTCACCTAGTGATGGACTGGTAGGAACAGCGCCACTGTCTTTTCTAGATGATATTATGCGCCAGCAAGTGGCTCCAGTTGAAAACCGTGCTAAAGAGGACGTGGTTGTGAATAAACCTGTTAATAATGATATACCTTTAGTTGGTGGTACATCTATTGCAACTTCTGAGTGTATGGTTCAAGAATCTCCAACAGAATATACTAACAAACTTGCTAGCACTATTTCAAAAGCAGATGCTGTGGAAAATTGGATTAAACAAGACCTTCTCAAACCTATTGATGGAAGGATGGACACCCTCAAGATGGGCAATCCTGAATTTTTGCCAGTGGAATATAATGAGGTTGCTCAACCGCCTGTTTGGGGTATTCCTGGATCAAATCCTCAATCAAAGAATGGAAACCATCAGAAGGATGATGCAGTTTTATCTTCAATTTCACCATCTGTTAGGTTTGGAGATGTGCAGGATTCTTCAAACTCACTCTTTAGCAATCAGGATCCCTGGAATGTACACGCTACCTACTTTCCACCACCTAGACCTAACAAAATTGCATTGAAGAAAGAGTATTCTTATAAGGATCAGCTTTGTGAGAATCTTGGCAACAGTGGGGAACAAAATTTAGAACCTCAATTGGATGATGGCCTCTACCAGACATTCAAACAAAATTTGACTCTAGAAGAAGCTCAATCTGCCAAGGAAGAACGACAGCTTCAAGCTGTTGCTGAAGGTTTAGCTGCTTCTGTTCTGAATTCAAGCACTTCTTCAAATCCTAGAGATGTGTCCCATTGTGAAAACATTGACAATGGAGATGTTCAAAATAATCTAATAGATATACAGTGTAAAGATAAAACTCAGGTTTCCTCTTCTGTGAAAATATTTCCAGTCCAGCTAAGCTATAACATTGCTGTGGGAATGTGGCCAGTCAAGCTTGCTGATTTGCACCATCCAAATGTGGTAGCTTTCTATGGTGTTGTGGTTGATGGTCCAGGAGGTTCTGTCGCAACTGTAACAGAGTATATGGTTAATGGTTCTTTAAGGAATTCCTTGCAGAAGAATGGGAGGAATCTTGATAAGCGCAAGCGTCTCCTGATTGCAATGGATGTGGCGTTTGGTATGGAGTACCTGCATGGAAAAAACATAGTACACTTTGACTTGAAAAGTGACAACTTGCTTGTGAATCTCCGAGATCCACACCGCCCAATATGCAAGGTTTAA 3423 0.4464 MAFDQNSSANDMRPPPTVVRTVPEEPLVLPASTTAVNGASGAMPLFYPASVSDAGMVGMGYGNVASGAAPTTWCVRPAVPIRHPTVNPAAAFSHAPSFPNRVVGGNAVDLSGSFVATAHGYPLNLGNWVTGNALDNGLQGNSRVVGNASDHAGGGALGGNGVNPPASQRGDQASEEGGGDDSVSGRKLKIMCSYGGKILPRPSDGMLRYVGGQTRIISVKRDVRFNDLVQKMVNIFGQPVVIKYQLPDEDLDALVSVSCPEDLENMMEEYERLIERSPDGSPKLRVFLFSASELDPSGVVQFVNLQDGGQRYVEAVNGITDGIGGKLTRKGSITSAASTQNSDLSGVEALDNSNAVQGDVSGAPVSSALSPEGNVAASHDATANFVVSEPVASIYSDASAVSLGIPVTNSGPTQAPPFQNEVELEKSVPITLSQQQFGLQQSGMEIPPPAPLQAFVDPRQEVMNHADYVQLPPHMGFPNPQLLGKPGSIYSQHQFHDNSPRLASHQVIPAVQMTMTQPSSHAGVRPSVIQPQTFMQLQQNHLNQYNDENTSGLRIHQLPPEQSYNAYPVQFPYGGNYGWVQVSPPEHVIFPDALLSQQPAMIPEKVQRVEDCYMCQKKLPHAHSDPVVQDQQNSCAGPIADSIPNYHSLPMEDNLRPQATNKVLVTAPMKEGNVEQAVGTRPRVISKLEPPGVVHCTDATGLPLEPEGERIFIVDRSDHPRNAAVIQETVGRTGEKQSPSDGLVGTAPLSFLDDIMRQQVAPVENRAKEDVVVNKPVNNDIPLVGGTSIATSECMVQESPTEYTNKLASTISKADAVENWIKQDLLKPIDGRMDTLKMGNPEFLPVEYNEVAQPPVWGIPGSNPQSKNGNHQKDDAVLSSISPSVRFGDVQDSSNSLFSNQDPWNVHATYFPPPRPNKIALKKEYSYKDQLCENLGNSGEQNLEPQLDDGLYQTFKQNLTLEEAQSAKEERQLQAVAEGLAASVLNSSTSSNPRDVSHCENIDNGDVQNNLIDIQCKDKTQVSSSVKIFPVQLSYNIAVGMWPVKLADLHHPNVVAFYGVVVDGPGGSVATVTEYMVNGSLRNSLQKNGRNLDKRKRLLIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDPHRPICKV 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi13g00268 1140 Gene3D - 208 291 - -
Sebi13g00268 1140 Pfam PB1 domain 207 289 IPR000270 GO:0005515
Sebi13g00268 1140 CDD PB1_UP2 191 289 - -
Sebi13g00268 1140 Pfam Protein tyrosine and serine/threonine kinase 1046 1129 IPR001245 GO:0004672|GO:0006468
Sebi13g00268 1140 ProSiteProfiles Protein kinase domain profile. 970 1140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi13g00268 1140 SUPERFAMILY Protein kinase-like (PK-like) 1027 1129 IPR011009 -
Sebi13g00268 1140 PANTHER OS05G0427100 PROTEIN-RELATED 181 518 - -
Sebi13g00268 1140 SUPERFAMILY CAD & PB1 domains 203 293 - -
Sebi13g00268 1140 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1116 1128 IPR008271 GO:0004672|GO:0006468
Sebi13g00268 1140 Gene3D Transferase(Phosphotransferase) domain 1 1044 1138 - -
Sebi13g00268 1140 SMART PB1_new 202 291 IPR000270 GO:0005515
Sebi13g00268 1140 MobiDBLite consensus disorder prediction 145 184 - -
Sebi13g00268 1140 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 207 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi13g00268 Sebi-Chr13 3187027 3191384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi13g00268 92 991 MAP Kinase Kinase Kinase AT3G46920 33.011 5.40e-95 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Sebi13g00268 PK_Tyr_Ser-Thr 1.3e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi13g00268 - - gmx:100776264 1439.86