Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi13g00237 ATGGCTTACGCTGCGATGAAACCTACTAAGCCCGGTTTGGAGGAGTCTCAAGAACAGATACATAAGATTAGGATCACCCTCTCATCTAAGAACGTCAAGAATCTGGAGAAAGTTTGCACCGACTTGATCCGTGGTGCCAAGGACAAGCGCCTTAGGGTCAAGGGTCCTGTTAGGATTAAGATGCCAACTAAAGTTCTTCACATTACCACCAGGAAATCCCCCTGTGGAGAAGGTAATTCTTCACTTCTTTGGGCATTGAATAATTCTTCACTCCGTTCTTTCTATGTTAGCACTTCTTTGGGTTCTTGGATCATACTTCGACTTTGGCATGCCTTTTTTCTATTGTTATTATGTTATCTGTTTATCTCTGTTGTCATTTGCATTTTTGCACGTTTCCGTTGA 402 0.4229 MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLIRGAKDKRLRVKGPVRIKMPTKVLHITTRKSPCGEGNSSLLWALNNSSLRSFYVSTSLGSWIILRLWHAFFLLLLCYLFISVVICIFARFR 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi13g00237 133 SUPERFAMILY Ribosomal protein S10 22 82 IPR036838 -
Sebi13g00237 133 Gene3D Ribosomal protein S10 domain 3 84 IPR036838 -
Sebi13g00237 133 PRINTS Ribosomal protein S10 family signature 59 74 IPR001848 GO:0003735|GO:0005840|GO:0006412
Sebi13g00237 133 PRINTS Ribosomal protein S10 family signature 22 35 IPR001848 GO:0003735|GO:0005840|GO:0006412
Sebi13g00237 133 SMART Ribosomal_S10_2 24 109 IPR027486 -
Sebi13g00237 133 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 14 80 IPR001848 GO:0003735|GO:0005840|GO:0006412
Sebi13g00237 133 Pfam Ribosomal protein S10p/S20e 24 85 IPR027486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi13g00237 Sebi-Chr13 2863945 2864457 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi13g00237 1 81 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 82.716 8.40e-43 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi13g00237 K02969 - cit:102621376 148.673