Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi13g00231 ATGACGTCACGTTCCGGCGCCGGCGGCGGAAGCGGAAGCGCCAGGACCCGAGTGGGGAAGTATGAACTAGGTCGGACCCTTGGCGAGGGCAATTTCGCGAAGGTGAAGTTTGCGAGGCATGTGGAAACTGGAGAACATATGGCCATCAAAATTCTTGACAAGGAAAAAGTTCTCAAGCACAAAATGATTGGTCAGATAAAGCGAGAAATATCAACAATGAAACTGATTAGACACCCAAATGTCATACGCATGTATGAGGTGATGGCTAGCAAGACAAAGATATATATTGTATTGGAATTTGTGACTGGTGGGGAGTTGTTTGATAAAATTGCACGCAATGGAAAGTTGAAAGAAGATGAAGCGAGAAAATATTTTCAACAGCTTATATGTGCTGTGGATTACTGTCATAGTAGAGGTGTTTTCCATAGAGACCTAAAGCCTGAGAATTTGTTGCTGGATGCTAATGGAGTGCTTAAAGTATCAGATTTTGGATTGAGTGCATTGCCTCAACAAGTTCGGGAAGATGGGCTACTTCACACAACATGCGGTACGCCAAATTATGTTGCTCCAGAGGTGATCCACAACAAAGGCTATGATGGTGCAAAGGCAGATCTCTGGTCATGTGGTGTTATTCTATTTGTTTTAATGGCTGGCTATTTGCCCTTCGAAGAAAACAATCTTATGGCTTTATATAAAAGTGGCATGGAGTGGCTGACTCCAAATGCTATAGGGAATAAGCAACATATTATGTTATGCAAAAATTACTTTCACTTAATTGGAGATTTGAACAAGGAATCTCCATACGGAGAGGAGATTTTCAAGGCCGAGTTCACGTGTCCCCCATGGTTCTCTTCAAGTGCAAAGAAACTAATCAAAAGAATCCTTGATCCCAATCCTTCCACGCGGATTACAATTTCTGAGGTCATTGAGAATGAGTGGTTCAAAAAGGGATATAAGCCTCCTGTGTTTGAACAGGCCAATGTTAGTCTTGATGATGTAAATTCTATTTTTGGTGAAGCTACGGATTCACAAAATCTTGTTGTTGAGAGGCGTGAAGAGGGGCATGTAGCACCAACAACCATGAATGCATTTGAGCTTATCTCTAAATCTCAGGGCCTCAACCTTAGCAGTCTTTTCGAAAAGCAAATGGGACTTGTTAAAAGGGAAACAAGGTTCACATCCAAATGTTCAGCAGATGAGATTATTTCAAAAATTGAGCAAGCTGCAGGACCTCTAGGTTTTGATGTTAAGAAGAACAACTGTAAGTTAAAGATTCAAGGGGAAAAGACTGGACGGAAAGGTCATCTATCTGTAGCCACTGAGATCTTGGAGGTGGCCCCTTCACTTTACATGGTTGAGCTACGTAAGTCTGAAGGAGATACTCTGGAATTTCACAAGTTCTACAAGAATCTAGCTACTGGGCTGAAAGATATAGTCTGGAAAGCAGAGCCTATTGATGAAGAAAAAGAGGGTGGTGCCAGTGCGTCCAAATAA 1494 0.4203 MTSRSGAGGGSGSARTRVGKYELGRTLGEGNFAKVKFARHVETGEHMAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFDKIARNGKLKEDEARKYFQQLICAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIHNKGYDGAKADLWSCGVILFVLMAGYLPFEENNLMALYKSGMEWLTPNAIGNKQHIMLCKNYFHLIGDLNKESPYGEEIFKAEFTCPPWFSSSAKKLIKRILDPNPSTRITISEVIENEWFKKGYKPPVFEQANVSLDDVNSIFGEATDSQNLVVERREEGHVAPTTMNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSKCSADEIISKIEQAAGPLGFDVKKNNCKLKIQGEKTGRKGHLSVATEILEVAPSLYMVELRKSEGDTLEFHKFYKNLATGLKDIVWKAEPIDEEKEGGASASK 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi13g00231 497 Pfam Protein kinase domain 21 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi13g00231 497 ProSiteProfiles NAF domain profile. 356 380 IPR018451 GO:0007165
Sebi13g00231 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Sebi13g00231 497 Gene3D Phosphorylase Kinase; domain 1 11 100 - -
Sebi13g00231 497 FunFam Non-specific serine/threonine protein kinase 355 481 - -
Sebi13g00231 497 CDD CIPK_C 362 477 - -
Sebi13g00231 497 CDD STKc_SnRK3 20 313 - -
Sebi13g00231 497 Gene3D Transferase(Phosphotransferase) domain 1 101 321 - -
Sebi13g00231 497 Pfam NAF domain 358 418 IPR004041 GO:0007165
Sebi13g00231 497 ProSiteProfiles Protein kinase domain profile. 21 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi13g00231 497 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Sebi13g00231 497 Gene3D Kinase associated domain 1, KA1 356 481 - -
Sebi13g00231 497 FunFam Non-specific serine/threonine protein kinase 14 253 - -
Sebi13g00231 497 SUPERFAMILY Protein kinase-like (PK-like) 18 332 IPR011009 -
Sebi13g00231 497 SMART serkin_6 21 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi13g00231 497 FunFam Non-specific serine/threonine protein kinase 12 100 - -
Sebi13g00231 497 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 18 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi13g00231 Sebi-Chr13 2772200 2779291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi13g00231 10 490 CBL-interacting serine-threonine protein kinases AT1G01140 63.039 0.0 631
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Sebi13g00231 Pkinase 1.4e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi13g00231 - - gmx:100788746 816.609