Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi13g00177 ATGGAAGCTAAATTTGAAGGGAAAAATCAGTATTTGTATGGACCAGTGGTGCCAGAAATGAAGAGTGTTGGGAAGAGAAGTTTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTTTTTACTGCTAGGCAACTGAATTCAGTGCCATCAGATTGTGGGAGTCGTCAGCTGTTCCCAGTTGATCCTGAAATACCTGCAAATGCTGATATTTCAAACAATTTGACTTCTGGCTGGGATGATATCAACCCTGGGGAAGAAAAGAGAGAATTGGAGAAGAGGAGGAGGGGTGTTATTGCTGAAGGGATGGAGATGAATGATGAAATTGGTTCTCTTAATTTGAACCTTGGGGGTCAAGTATACCCTATCATGGAAGGGGAGGAAAAAAGTGGAAAGAAGACAAAGATAACTGTGACTACTTCAAACCGCGCAGTTTGTCAGGTGGAAGATTGTCGGGCTGATCTTAGTAATGCAAAGGATTACCACCGCCGTCACAAAGTTTGTGATGTGCATTCTAAGGCTAGCAGGGCACTAGTGGGAAATGTTATGCAGCGATTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGAAGGCGTCTGGCTGGCCACAATAAGAGGAGGAGGAAAACACATCCTGATGCTACTGCAGCTAATGGAGGTTCTCTGAACGAAGAAAGGGGCAGTAGCTATCTGTTAATGAGTTTGCTGAGGATATTGTCCAATATGCACTCAAATGGCTCGGATCATACAAGAAATGAGGATGTTCTATCTCGTCTTCTGGGGAACCTGGCAAGTCAGGCTGGTACTATTAATGGAAGAAATATGGCATCTTTATTGGAGGGATCTCAAGATTTGGTAAAAGCTGGGACATCTGGATCTGCACAGAATGTTCAAAACACAGATTCAAATTCAAATGGTCCTGGACCATCCAGACCTTTCGGTTCTTCTATCAAGATGGGTAATGGTAAAATCCATCAGGACTCTCTGGATTCTAGGTTACAGTGTGAGATGGTTCATGCAAATGATATGACACAAAAATGTACACCTTCAGGCAGTGGTGGTGTTGGAAGTTCAAAACCTCCTTTGGGACCACAGTCCTCAAATGTACTTCTGTCAAGGGGTAGCCCTCCACCCCAATCAGTTGCAGCTGAGACTACAGTTGGAAGAAATGGCTTAAGTGATATTGACCTGAATAATGTATATGATGATGTGCAGGATTATGTTGAGAACCCCAGGAATTCTCATCCTCCTGTGGCTTCAGGGATTGGGCCTCTTGATCATCCTTCATGGGTACAATGTGACTCTCTCAAGTCAAGTCCACCACAGACAAGTAGAAACTCAGATTCAACCTCTACCCAGTCACCATCTAGTTCTAGTGGAGAAGCTCAGATCCTTAACTGGTTATCCCACAGTCCCACAGAGATAGAGAGCTATATAAGGCCAGGCTGTATCATATTAACTATATATCTCCGCCTAGAAAATTCTGCATGGGAGGAGCTATGCTATAATCTAGGGTCCAGCTTGAGAAAGCTTCTTGCTGCATCAAATGATTCTTTTTGGAGAACAGGATGGGTATACACAAGGGTGCGACACTCTGTAGCTTTTCTGTATAATGGTCAGGTGGTCTTAGATGTGCCATTGCGCCTCAAAAGCCCACAAAATTGTCAGATTTTGTGCATTACACCACTTGCTGTTTCTGCAAGTGCAAGTGCAAAATTTATTGTGAAAGGATTCAACCTTTCCCTGTCTAGCACAAGGTTGCTCTGTGCTCTTGAAGGGAAGTATCTGGTACAGGATAATTGTTATGATTTGATTGATGGTGCTGATGCAGCCATTGGATATCATGAGCTTCAGCATCTCAGCTTCTCTTGTCACATACCAAATATGACTGGAAGAGGGTTTATTGAGGTGGTAGAAGATATTGGTCTTAGCAGCTGTTCCTTTCCATTCATAGTTGCAGAGCAAGAAATTTGTTCAGAAATATGTAAGCTGGAGAATGTCATTGAGGCAGCAGAGACTACTGATGACATCCAGATAAAAACCAAACTAATGGAAGAAAAAACTCGAGCATTGTATTTCATACAAGAAATGGGTTGGCTCCTTCATAGAAGTCGTGTGAAAGTTAGGCTAGGTCCAATGGCACCTGTCCAAGATCGCTTCCATTTTAATCGGTTCACATGGCTTGTTGGCTTCTCTGTGGACCATGATTGGTGTGCTGTGATGAAAAAACTGTTAGATATTATCTTTGATGGTGCTGTTGATACAGGAGAGCATTCCTCCATTAAGCTTGCATTATTAGACATGGATCTTCTACACACAGCTGTAAAGAGAAATTGCAGGCCTATGGTGGAACTACTGTTGAACTTTGTGCCAGTTAAAGCCTCAGATGGTGAAGACACTAAAGAGAAGCAAGTCAACAAGTCCCCTGACATATTCTTGTTTAGACCTGATACCGTTGGGCCTGCTGGGTTGACACCCCTTCATGTTGCAGCAAGTACAAATGGCTCTGAGAATGTATTGGATGCATTAACTGATGATCCAGGAATGGTGGGAACTGAGGCATGGAAAAGTGTCAAGGACAACACAGGTTTGACACCCTATGACTATGCATCCCTGAGGGGCTACTACTCCTACATTCAACTTGTTCAAAGGAAAACAAGCAAGAAATGTGAAAGCCAACATGTGCTTGATATCCCAAGCACCCTTGTAGACAGTAACATAAAGCAGAAGCAATCAGATGGGCACAGGTCATCAAAAGTTTCAAGTTTGCAGACTGAAATAACAGCAATGCCACACCAATGTGGGCTCTGCCAACACAAGCTGGCATACGGTGGCGTGAGAAGGCCACTGGTTTATAGGCCGGCAATGCTGTCAATGGTTGCCATTGCAGCTGTATGTGTCTGTGTGGCTTTGCTCTTCAAAAGCTCACCAAAAGTTTCTTATGTATTCCAGCCCTTCAACTGGGAATCATTAGAGTATGGGTCAATCTAA 3024 0.4339 MEAKFEGKNQYLYGPVVPEMKSVGKRSLEWDLNDWKWDGDLFTARQLNSVPSDCGSRQLFPVDPEIPANADISNNLTSGWDDINPGEEKRELEKRRRGVIAEGMEMNDEIGSLNLNLGGQVYPIMEGEEKSGKKTKITVTTSNRAVCQVEDCRADLSNAKDYHRRHKVCDVHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDATAANGGSLNEERGSSYLLMSLLRILSNMHSNGSDHTRNEDVLSRLLGNLASQAGTINGRNMASLLEGSQDLVKAGTSGSAQNVQNTDSNSNGPGPSRPFGSSIKMGNGKIHQDSLDSRLQCEMVHANDMTQKCTPSGSGGVGSSKPPLGPQSSNVLLSRGSPPPQSVAAETTVGRNGLSDIDLNNVYDDVQDYVENPRNSHPPVASGIGPLDHPSWVQCDSLKSSPPQTSRNSDSTSTQSPSSSSGEAQILNWLSHSPTEIESYIRPGCIILTIYLRLENSAWEELCYNLGSSLRKLLAASNDSFWRTGWVYTRVRHSVAFLYNGQVVLDVPLRLKSPQNCQILCITPLAVSASASAKFIVKGFNLSLSSTRLLCALEGKYLVQDNCYDLIDGADAAIGYHELQHLSFSCHIPNMTGRGFIEVVEDIGLSSCSFPFIVAEQEICSEICKLENVIEAAETTDDIQIKTKLMEEKTRALYFIQEMGWLLHRSRVKVRLGPMAPVQDRFHFNRFTWLVGFSVDHDWCAVMKKLLDIIFDGAVDTGEHSSIKLALLDMDLLHTAVKRNCRPMVELLLNFVPVKASDGEDTKEKQVNKSPDIFLFRPDTVGPAGLTPLHVAASTNGSENVLDALTDDPGMVGTEAWKSVKDNTGLTPYDYASLRGYYSYIQLVQRKTSKKCESQHVLDIPSTLVDSNIKQKQSDGHRSSKVSSLQTEITAMPHQCGLCQHKLAYGGVRRPLVYRPAMLSMVAIAAVCVCVALLFKSSPKVSYVFQPFNWESLEYGSI 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi13g00177 1007 MobiDBLite consensus disorder prediction 300 322 - -
Sebi13g00177 1007 SUPERFAMILY Ankyrin repeat 779 893 IPR036770 -
Sebi13g00177 1007 MobiDBLite consensus disorder prediction 441 470 - -
Sebi13g00177 1007 FunFam Squamosa promoter-binding-like protein 14 138 208 - -
Sebi13g00177 1007 Gene3D - 138 208 IPR036893 GO:0003677|GO:0005634
Sebi13g00177 1007 MobiDBLite consensus disorder prediction 211 234 - -
Sebi13g00177 1007 MobiDBLite consensus disorder prediction 355 407 - -
Sebi13g00177 1007 ProSiteProfiles Zinc finger SBP-type profile. 144 221 IPR004333 GO:0003677
Sebi13g00177 1007 MobiDBLite consensus disorder prediction 355 404 - -
Sebi13g00177 1007 Pfam SBP domain 147 220 IPR004333 GO:0003677
Sebi13g00177 1007 Gene3D - 761 909 IPR036770 -
Sebi13g00177 1007 MobiDBLite consensus disorder prediction 300 337 - -
Sebi13g00177 1007 MobiDBLite consensus disorder prediction 443 470 - -
Sebi13g00177 1007 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 131 822 IPR044817 GO:0003677
Sebi13g00177 1007 SUPERFAMILY SBT domain 145 225 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi13g00177 Sebi-Chr13 2086404 2097050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi13g00177 1 1006 SBP-box Gene Family AT3G60030 43.241 0.0 719
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sebi13g00177 SBP 1.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi13g00177 - - gmx:100776125 1642.86