Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi13g00172 ATGGCATCTGATCTAAATTCGGGCTTGTCCAAGAAAACATTTGTTTTTGGATTGAAAATATGGGTATTGATGGGAATAATAGTTGGTTTGTTCATTATAGTCATTCTTGTGGTGCTATCAATATGTCTTACTTTAAGAAAGAAGTCCAGAAGAGTCAATGGCAAGCTTCCGCTTAGCCATATCTTATCTGTTTCAGAAGAGATCAAAGAAATTAGAGTTGATCAAGTTTCATCAAATAATCATTCGCAAAACGGTGCTTTTATGAGTCTGAATGATAGATTTGGTGATAGTGAGTCTGAAAAGGTTTTGATGCAAACAAAGAACAGGGATAATAGCAGTCAATCAGGCTCATTTAATCACTTAGAGAAAGATGCAAATGGCTCTCAATCAGGTGAAGAAACTGGTCCCAAGAGCACTTCTGCTCACAGGTCTTCTTTGCATCCTATAACTGCACCATCCCCTTTGTCTGGTCTACCTGAATTCTCTCACCTTGGCTGGGGCCACTGGTTTACATTAAGGGACCTAGAACTTGCAACGAACAGATTCTCAAAAGACAATGTTATTGGTGAAGGTGGTTATGGAATTGTTTATCGAGGTCAACTTATCAATGGGAATCCTGTGGCCATTAAGAAGCTCCTCAATAATTTAGGACAAGCTGAAAAGGAATTTAGGGTGGAAGTTGAGGCTATTGGTCACGTGCGGCATAAGAACTTGGTGAGACTTTTGGGCTATTGTATTGAAGGCACTCACAGTTTCATTCTTATTGAACTCGCTGTTAATTTCAGGTTATTGGTTTATGAGTATGTTAACAATGGCAATTTAGAGCAGTGGCTTCACGGCGCCATGCGGCAGCATGGCTTTCTTACTTGGGAAGCTCGAATGAAAATTGTCCTTGGAACAGCCAAAGCGCTGGCTTACTTGCATGAGGCAATTGAGCCAAAAGTTGTGCATCGAGATATTAAGTCGAGCAATATTCTTATTGATGATGACTTTAATGCCAAAATATCCGACTTTGGGCTGGCTAAGTTACTGGGTGCTGGAAAAAGTCATATTACAACTAGAGTAAATTTGGTTGACTGGCTTAAGATGATGGTAGGGTGTAGGCGCTCAGAAGAGGTGGTAGACCCCAACATTGAGACCAGACCATCAACAAGTGCCCTTAAACGAGCCCTTTTGACTGCTTTGAGGTGTGTTGATCCAGATGCTGAAAAAAGACCAAGGATGAGCCAAGTTGTCCGCATGCTTGAATCGGAGGAATATCCCATTCCTCGAGAGTTTGTGCTTTTTGAAATTACATTTGGTTCCTTGCAACAGCATTTGAAAAAGGATCGAAGAAGGCGAAGAAGTCAGGCTGGAAACATAGAGCTAGAGACTCAGAGGGAGACTTCTGATACAGATAAGAGTGACAATCCAGATTATAAGCCAAATGGCAGAAGGAACCAACACATGTAG 1452 0.4125 MASDLNSGLSKKTFVFGLKIWVLMGIIVGLFIIVILVVLSICLTLRKKSRRVNGKLPLSHILSVSEEIKEIRVDQVSSNNHSQNGAFMSLNDRFGDSESEKVLMQTKNRDNSSQSGSFNHLEKDANGSQSGEETGPKSTSAHRSSLHPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKDNVIGEGGYGIVYRGQLINGNPVAIKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHSFILIELAVNFRLLVYEYVNNGNLEQWLHGAMRQHGFLTWEARMKIVLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKISDFGLAKLLGAGKSHITTRVNLVDWLKMMVGCRRSEEVVDPNIETRPSTSALKRALLTALRCVDPDAEKRPRMSQVVRMLESEEYPIPREFVLFEITFGSLQQHLKKDRRRRRSQAGNIELETQRETSDTDKSDNPDYKPNGRRNQHM 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi13g00172 483 Gene3D Transferase(Phosphotransferase) domain 1 354 422 - -
Sebi13g00172 483 Gene3D Transferase(Phosphotransferase) domain 1 269 353 - -
Sebi13g00172 483 ProSiteProfiles Protein kinase domain profile. 182 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi13g00172 483 ProSitePatterns Protein kinases ATP-binding region signature. 188 211 IPR017441 GO:0005524
Sebi13g00172 483 FunFam Os07g0541700 protein 269 357 - -
Sebi13g00172 483 MobiDBLite consensus disorder prediction 106 151 - -
Sebi13g00172 483 MobiDBLite consensus disorder prediction 448 483 - -
Sebi13g00172 483 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 164 268 - -
Sebi13g00172 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 315 327 IPR008271 GO:0004672|GO:0006468
Sebi13g00172 483 PANTHER OS01G0323000 PROTEIN 4 355 - -
Sebi13g00172 483 SUPERFAMILY Protein kinase-like (PK-like) 166 423 IPR011009 -
Sebi13g00172 483 MobiDBLite consensus disorder prediction 441 483 - -
Sebi13g00172 483 MobiDBLite consensus disorder prediction 101 151 - -
Sebi13g00172 483 SMART serkin_6 182 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi13g00172 483 Gene3D Phosphorylase Kinase; domain 1 166 268 - -
Sebi13g00172 483 Pfam Protein kinase domain 183 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi13g00172 Sebi-Chr13 2012633 2015806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi13g00172 159 418 Trihelix Transcription Factor Family AT1G70460 38.535 1.21e-57 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Sebi13g00172 Pkinase 2.1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi13g00172 - - gmx:732653 777.704