Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi13g00149 ATGGCTTCCTCATCATCTCATAAACTCTTCTTCCTTCTGCTTGCAATCTTCTTTTCACACACTTGGGCTATCCACTCCAATGCCACCACAACATTACACACCAAGCTCTCTTCCTTGAGATCTTTCTGCAGCACTACTCCATACCCAGAAGTTTGCTTCAATTCATTGAAGCTGTCCATTTCAATAAATATAAGCCCAAACATCATCAACTACCTCCTTCAGTCCCTCCAAGTAGCAATATCTGAAGCCACAAAGCTCTCTAACCAATTCCACAATGCAGGACACTCCAACATCATAGAGAAGCAAAGAGGAGCAGTCCAAGATTGCAGGGAACTTCACCAATCCACATTGGCTTCTTTGAAAAGATCCTTATCTGGGATTCGTTCCCCCAACACTAGGAATCTAGTTGATGCAAGAACATACCTCAGTGCAGCACTCACCAACAAGAACACATGTCTAGAAGGCCTAGATTCTGCTTCTGGTACACTGAAGCCAGTTTTGGTGAACTCTGTCATCAACACTTACAAGCATGTGAGTAATTCTCTTTCTATGCTCTCTAAGCCAGGGGTAGGGGCTCCCAAAGGCCACAAGAACCGGCGTCTGATGAGTGCTCCAAAGTGGTTGTCAAGAAGAGGCCGTAGCCTCTTGCAAAACTCAGATGGGGAAGAATATGATCCAAATGAAATGCTTGTTGTGGCTGCAGATGGAACTGGGAACTTCAGCACCATTACTGATGCAATCAACTTTGCTCCAAATAACAGCATGGATAGGGTAGTGATCTATGTCAAGGAAGGGGTTTATGAGGAAAATGTAGAAATCCCAAGTTATAAGACCAACATTGTTATGCTTGGAGATGGAAGTGATGTCACTGTCATAACTGGTAACAGAAGTATGGTTGGTGGCTGGACCACTTTCAGATCTGCAACTCTAGCGGTTTCTGGTGATGGTTTTCTTGCAAGAGATATAGCATTTGAGAACAGTGCAGGGCCAGAGAAACATCAAGCAGTTGCCTTGAGGGTCAATGCAGATTTGACTGCATTTTACAGGTGTGCCATTTATGGTTACCAAGACACTCTGTATGTTCACTCCTTTAGACAATTCTATAGAGAGTGTGACATTTATGGGACCATAGATTACATATTTGGGAATGCAGCAGTGGTTCTACAAGAATGTAACATTGTATCAAGAATGCCATTGCCTGGCCAATTCACTGTTATTACAGCTCAATCCAGAGATAACCCAGATGAGGACACTGGCATCTCAATCCAAAACTGCTCAATTATAGCTACCAGTGATCTTTATTCCAACTCTAACAGCTTCAAGAGTTACCTTGGGAGGCCATGGAGGGTCTATTCTCGCACTGTTTACCTTGAGTCTTATATTGATGACTTTATTGATCCAAAGGGTTGGTCAAAGTGGACTAATGATCAAGGGTTGGACACATTGTATTATGGAGAGTATGAGAATTATGGACCTGGTTCAACTACAGATAATAGGGTAGGATGGCTTGGTTACCATTTAATGGATTACAATGATGCCTATAATTTCACAGTTTCAGAGTTCATTACTGGTGATGATTGGCTTGAGTCTACTTCTTTTCCTTATAATGATGGGATTTGA 1620 0.4241 MASSSSHKLFFLLLAIFFSHTWAIHSNATTTLHTKLSSLRSFCSTTPYPEVCFNSLKLSISINISPNIINYLLQSLQVAISEATKLSNQFHNAGHSNIIEKQRGAVQDCRELHQSTLASLKRSLSGIRSPNTRNLVDARTYLSAALTNKNTCLEGLDSASGTLKPVLVNSVINTYKHVSNSLSMLSKPGVGAPKGHKNRRLMSAPKWLSRRGRSLLQNSDGEEYDPNEMLVVAADGTGNFSTITDAINFAPNNSMDRVVIYVKEGVYEENVEIPSYKTNIVMLGDGSDVTVITGNRSMVGGWTTFRSATLAVSGDGFLARDIAFENSAGPEKHQAVALRVNADLTAFYRCAIYGYQDTLYVHSFRQFYRECDIYGTIDYIFGNAAVVLQECNIVSRMPLPGQFTVITAQSRDNPDEDTGISIQNCSIIATSDLYSNSNSFKSYLGRPWRVYSRTVYLESYIDDFIDPKGWSKWTNDQGLDTLYYGEYENYGPGSTTDNRVGWLGYHLMDYNDAYNFTVSEFITGDDWLESTSFPYNDGI 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi13g00149 539 PANTHER PECTINESTERASE 17 529 - -
Sebi13g00149 539 Pfam Pectinesterase 230 525 IPR000070 GO:0030599|GO:0042545
Sebi13g00149 539 Gene3D - 225 539 IPR012334 -
Sebi13g00149 539 SUPERFAMILY Pectin lyase-like 227 536 IPR011050 -
Sebi13g00149 539 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 187 IPR035513 -
Sebi13g00149 539 CDD PMEI-like_3 41 188 - -
Sebi13g00149 539 Pfam Plant invertase/pectin methylesterase inhibitor 38 184 IPR006501 GO:0004857
Sebi13g00149 539 SMART PMEI_2 34 184 IPR006501 GO:0004857
Sebi13g00149 539 ProSitePatterns Pectinesterase signature 2. 373 382 IPR033131 -
Sebi13g00149 539 NCBIfam pectinesterase inhibitor domain 1 186 IPR006501 GO:0004857
Sebi13g00149 539 FunFam Pectinesterase 35 187 - -
Sebi13g00149 539 FunFam Pectinesterase 223 539 - -
Sebi13g00149 539 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 187 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi13g00149 Sebi-Chr13 1761158 1763082 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi13g00149 31 539 Carbohydrate Esterase AT2G26440 67.562 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi13g00149 - - gmx:100776969 918.302