Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi13g00148 ATGGCATTTCAGGATTTTGATCTCATATCAGAAAGGAGAAAAAATGAGAAGAGACAAAAGCTGAAGAAGAAGATTATGATTGGTCTAGTTTCAGCCATTCTCCTTGCATGTATAATAGGTGCTGCAGCATTTGTTATAGTTAATAGATCTGGTCCTGACACCACCAACAACACCAAGCATAAGGCTCCCTCAGCACCTGCCAATAATGCTCAACCTCAACATGTGGATAAATTTTCCAGACTTGTGAAAATGATATGTAGTTCTGCAGTATACAAGAGCAAATGTGAAAGCACCCTTACTGAGGCATTGAAGAAGGACCCCAAATTGGCACAACCAAAGAATCTTCTCATGGTTTCTATGATACTTGCTGAGGCTGAGGTTAACAAGGCCTTCAACAAAACCACCACCTTGAAGTTTGCTTCTGAGCAGGAGAAAGGAGCATATGAAGATTGCAAGCAGTTGTTTGAGGATGCTAAGGAAGAGATGGGATTCTCTATCACTGAAGTTGGTTCAAATGATTTGACCAAGCTTTCCACAAAAGCTCCTGAAATTAATAACTGGCTCAGTGCAGTCATGTCTTACCAACAAACCTGCATTGATGGGTTTCCTGAAGGAAAGTTGAAGGATGAATTTGAGAAGCTTTTCAAGGAATCCAGGGAACTTGTTAGCAATTCCCTTGCTGTTGTGTCACAAGTGTCTTCCTTCTTTAGTGCATTCCAAGGAGCTTCAGATATTCATTTTCCATGCCCTCCTGAGTTGGTGGGAACACTTGAGAAACCCACACCTAATGTCACTGTGGCAAAAGATGGCAGTGGAAACTTCAAAACCATCTCTGAAGCTTTGGCAGCTATCCCACAAAACTACGAAGGAAGGTATGTGGTTTATGTTAAAGAAGGAGTATATGATGAGACAGTGACAGTGACAAAGATAATGGTAAATCTAACCATGTATGGTGATGGATCACAAAAGAGCATCATCACTGGCAACAAAAATTTTGTGGATGGAGTGAGGACTTTCCAAACTGCAACATTTGTTGTACTTGGAGAAGGATTCTTGGGCAGAGAAATGGGATTCAGAAACACTGCTGGTGCAGAAAAGCACCAAGCAGTGGCAGCAAGAGTGCAAGCAGATCAAGCAGTGTTTGTCAATTGTGCATTTGAGGGCTACCAAGACACTCTATATGCCCAAACACATAGACAATTCTACCGTGACTGTGTCATTGCTGGCACAATTGACTTCATCTTTGGTGATGCAGCTGCTGTGTTCCAAAACTGCACCATGGTTTTAAGAAAACCACTTGACAACCAGCAGAACATTGTCACTGCTCAAGGGAGAATTGACAAGCAAGAAAACACTGGCTTTGTTCTCCAAAAGTGTTTGATCAAGGGTGATGAGGCACTAGTTCCTGTGATCAAGAATTACCTTGGAAGGCCATGGAAGGAGTACTCAAGAACCATCATTATGGAATCAGAAATTGGGGGCTTAATTCACCCTGATGGGTGGCTACCTTGGGAAGGAGAGTTTGCACTCAATACACTGTATTATGCAGAGTACAACAACAATGGAGCTGGTGCCAACACCAATGCAAGGGTCAAATGGCCTGGCCGCAAGGACATTAATAGGGATGAGGCTAGCAAGTATACCGTGGAGCCTTTCTTGCAAGGGACATGGATCAATGGCACAGGAGTACCAGCTCAGCTGGGCTTGTATAGTTGA 1716 0.4301 MAFQDFDLISERRKNEKRQKLKKKIMIGLVSAILLACIIGAAAFVIVNRSGPDTTNNTKHKAPSAPANNAQPQHVDKFSRLVKMICSSAVYKSKCESTLTEALKKDPKLAQPKNLLMVSMILAEAEVNKAFNKTTTLKFASEQEKGAYEDCKQLFEDAKEEMGFSITEVGSNDLTKLSTKAPEINNWLSAVMSYQQTCIDGFPEGKLKDEFEKLFKESRELVSNSLAVVSQVSSFFSAFQGASDIHFPCPPELVGTLEKPTPNVTVAKDGSGNFKTISEALAAIPQNYEGRYVVYVKEGVYDETVTVTKIMVNLTMYGDGSQKSIITGNKNFVDGVRTFQTATFVVLGEGFLGREMGFRNTAGAEKHQAVAARVQADQAVFVNCAFEGYQDTLYAQTHRQFYRDCVIAGTIDFIFGDAAAVFQNCTMVLRKPLDNQQNIVTAQGRIDKQENTGFVLQKCLIKGDEALVPVIKNYLGRPWKEYSRTIIMESEIGGLIHPDGWLPWEGEFALNTLYYAEYNNNGAGANTNARVKWPGRKDINRDEASKYTVEPFLQGTWINGTGVPAQLGLYS 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi13g00148 571 Gene3D - 261 571 IPR012334 -
Sebi13g00148 571 PANTHER PECTINESTERASE 38 559 - -
Sebi13g00148 571 CDD PMEI-like_3 85 234 - -
Sebi13g00148 571 SMART PMEI_2 77 228 IPR006501 GO:0004857
Sebi13g00148 571 FunFam Pectinesterase 257 569 - -
Sebi13g00148 571 Pfam Plant invertase/pectin methylesterase inhibitor 81 227 IPR006501 GO:0004857
Sebi13g00148 571 Gene3D Invertase/pectin methylesterase inhibitor family protein 79 233 IPR035513 -
Sebi13g00148 571 FunFam Pectinesterase 78 233 - -
Sebi13g00148 571 MobiDBLite consensus disorder prediction 53 73 - -
Sebi13g00148 571 ProSitePatterns Pectinesterase signature 2. 407 416 IPR033131 -
Sebi13g00148 571 Pfam Pectinesterase 263 555 IPR000070 GO:0030599|GO:0042545
Sebi13g00148 571 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 80 232 IPR035513 -
Sebi13g00148 571 SUPERFAMILY Pectin lyase-like 260 564 IPR011050 -
Sebi13g00148 571 NCBIfam pectinesterase inhibitor domain 75 232 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi13g00148 Sebi-Chr13 1755325 1757733 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi13g00148 1 570 Carbohydrate Esterase AT2G26450 47.876 0.0 571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi13g00148 - - gmx:100784679 699.508